Table 2.

Stable SNPs co-detected in multiple environments associated with plant height and flag leaf length.

Trait	Years	SNP	Chr	Position (bp)	LOD > 3	r2 (%)
PH	2016, 2017	Kukri_c34553_89	2B	887912	4.60–6.43	1.95–2.32
	2016, 2017	RAC875_c8121_1490	3A	1272572	5.05–7.07	5.76–13.88
	2015, 2017, 2018	IACX3190	3B	1429597	5.05–6.35	4.29–8.51
	2017, 2018	GENE_3659_104	6A	2991495	3.44–3.86	1.50–2.54
	2016, 2017	wsnp_Ex_rep_c66315_64480362	6B	3350804	3.67–6.78	3.10–4.63
	2016, 2017, 2018	Ku_c5191_340	6B	3397322	3.05–7.92	0.72–4.39
FLL	2017, 2018	tplb0049a09_1302	5A	2453837	3.88–7.17	5.04–13.14

PH (plant height); FLL (flag leaf length). r² (%) represents proportion of total phenotypic variation explained by each SNP.