Table 3.
Stable SNPs identified simultaneously in different environments and different methods associated with plant height and flag leaf length.
| Trait | Years | Methods (1–4) | SNP | Chr | Position (bp) | LOD > 3 | r2 (%) |
|---|---|---|---|---|---|---|---|
| PH | 2016, 2017 | 2016 (1, 4), 2017 (1, 2) | Kukri_c34553_89 | 2B | 887912 | 3.22–6.43 | 1.95–3.42 |
| 2016, 2017 | 2016 (1, 2, 3, 4), 2017 (1, 2, 3) | RAC875_c8121_1490 | 3A | 1272572 | 4.98–9.25 | 5.67–13.88 | |
| 2016, 2017 | 2016 (1, 4) | wsnp_Ex_rep_c66315_64480362 | 6B | 3350804 | 3.12–6.78 | 3.10–5.73 | |
| 2016, 2017, 2018 | 2016 (1, 2, 4), 2017 (1, 4) | Ku_c5191_340 | 6B | 3397322 | 3.05–9.30 | 0.72–12.99 | |
| FLL | 2017, 2018 | 2017 (1, 2) | tplb0049a09_1302 | 5A | 2453837 | 3.88–7.17 | 5.04–13.14 |
Methods (1–4): Corresponding four multi-locus GWAS methods i.e. mrMLM, FASTmrMLM, FASTmrEMMA, and pLARmEB, respectively. r2 (%) represents proportion of total phenotypic variation explained by each SNP. PH (plant height); FLL (flag leaf length).