REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Biological Samples | ||
Chimpanzee fecal samples | Kanyawara Chimpanzee Project | https://kibalechimpanzees.wordpress.com/ |
Chimpanzee fecal samples | Ngogo Chimpanzee Project | http://ngogochimpanzeeproject.org/ |
Critical Commercial Assays | ||
DNeasy Powersoil Kit | Qiagen | Cat. #12888–100 |
Deposited Data | ||
Chimpanzee fecal sample sequence data | This Study | ENA Accession # PRJEB39807 https://www.ebi.ac.uk/ena/browser/view/PRJEB39807 |
Greengenes database 13.8 | [69] | https://data.qiime2.org/2020.2/common/gg-13–8-99–515-806-nb-classifier.qza |
Oligonucleotides | ||
16S V4 amplicon primers | [66] | 515F: GTGYCAGCMGCCGCGGTAA 806R: GGACTACNVGGGTWTCTAAT |
Software and Algorithms | ||
qiime2 | [68] | https://docs.qiime2.org/2020.8/ |
R | [70] | https://www.r-project.org/ |
lme4 | [71] | https://github.com/lme4/lme4/ |
emmeans | [72] | https://github.com/rvlenth/emmeans |
vegan | [73] | https://github.com/vegandevs/vegan |
mctoolsr | [74] | http://leffj.github.io/mctoolsr/ |
indicspecies | [75] | https://www.rdocumentation.org/packages/indicspecies/versions/1.7.9 |