Table 1.

Gene ontology (GO) biologic processes significantly enriched after valproic acid treatment

GO term	# proteins (DE/all)	P value
Low-density lipoprotein particle clearance	6/9	0.002
ATP hydrolysis coupled cation transmembrane transport	9/19	0.003
SRP-dependent cotranslational protein targeting to membrane	10/24	0.005
Viral transcription	10/24	0.005
Ephrin receptor signaling pathway	7/15	0.009
Membrane organization	31/112	0.01
Regulation of hormone secretion	9/3	0.012
G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger	9/17	0.018
Response to insulin	11/33	0.021
Generation of precursor metabolites and energy	30/110	0.026
Nuclear-transcribed mRNA catabolic process	10/30	0.028
Mitochondrion organization	20/75	0.03
Retrograde vesicle-mediated transport, Golgi to Endoplasmic Reticulum (ER)	5/11	0.031
Regulation of neurotransmitter transport	10/19	0.033
Regulation of nucleotide metabolic process	6/15	0.036
Gluconeogenesis	7/19	0.037
Antigen processing and presentation	7/19	0.037
Dendrite morphogenesis	7/19	0.037
Monovalent inorganic cation transport	16/58	0.038
Cellular response to hormone stimulus	19/64	0.04
Metal ion transport	20/77	0.04
ATP metabolic process	19/73	0.044
Regulation of dendrite development	5/12	0.046
Regulation of peptidyl-tyrosine phosphorylation	6/16	0.049
Tricarboxylic acid cycle	7/20	0.049

# proteins are the number of proteins differentially expressed in this proteomic data set out of the total number of proteins that contribute to that GO term.

P value represents the corrected p value after Elim pruning.