Table 1.
Evaluation summary of assemblies using MaSuRCA contigs as input assemblies for HG001
| SLR-superscaffolder | fragScaff | Architect | ARKS | MaSuRCA | |
|---|---|---|---|---|---|
| Number of scaffolds (> 1000 bp) | 119,630 | 166,476 | 307,205 | 213,076 | 300,831 |
| Largest scaffold (bp) | 62,433,675 | 4,043,217 | 202,889 | 2,756,390 | 177,746 |
| Total assembled length (bp) | 3,345,341,888 | 3,672,256,418 | 3,038,310,109 | 2,908,519,565 | 2,907,642,015 |
| NG50 (bp) | 17,657,864 | 400,954 | 14,042 | 37,406 | 13,405 |
| NGA50 (bp) | 380,495 | 17,539 | 13,705 | 15,020 | 13,232 |
| Relocation | 11,015 | 92,267 | 3828 | 51,228 | 1648 |
| Inversion | 2939 | 5349 | 1637 | 5190 | 180 |
| Translocation | 2472 | 2294 | 903 | 10,828 | 849 |
| Number of misassemblies | 16,426 | 99,910 | 6368 | 67,246 | 4475 |