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. 2020 Dec 31;106(4):e1041–e1050. doi: 10.1210/clinem/dgaa955

Table 1.

MKRN3 missense variants identified in patients with CPP and pathogenicity assessment through ACMG criteria

Position cDNA Protein rs Populationdata(AF) ACMG criteria
gnomAD ABraOM Detailed staging Classification
15:23812024 c.1095G>T p.Arg365Ser rs879255240 0.000003976 Not reported PS4, PM2, PP1, PP3, PP4, PP5 Pathogenic
15:23812178 c.1249T>A p.Phe417Ile NA Not reported Not reported PS4, PM2, PP1, PP3, PP4, PP5 Pathogenic
15:23811132 c.203G>A p.Arg68His rs149274884 0.00001201 Not reported PM2, PP1, PP2, PP4, PP5, BP4 Likely pathogenic
15:23811653 c.724C>T p.Arg242Trp rs1277371835 0.00001193 Not reported PM2, PP1, PP2, PP4, BP4 Likely pathogenic
15:23811834 c.905C>T p.Ala302Val NA Not reported Not reported PS4, PM2, PP1, PP3, PP4 Likely pathogenic
15:23811912 c.983G>A p.Arg328His rs1355723562 0.00006371 Not reported PS4, PM2, PP1, PP3, PP4 Likely pathogenic
15:23811911 c.982C>T p.Arg328Cys rs1355723562 0.00006371 Not reported PS4, PM2, PP1, PP3, PP4 Likely pathogenic
15:23812178 c.1249T>C p.Phe417Leu rs745560329 0.000003976 Not reported PM2, PM5, PP1, PP2, PP4, BP4 Likely pathogenic
15:23812181 c.1252T>C p.Tyr418His rs1470111765 0.000003976 Not reported PM2, PP2, PP1, PP2, PP3, PP4 Likely pathogenic
15:23811819 c.890T>C p.Met297Arg rs147605349 0.00001193 Not reported PM2, PP1, PP2, PP3, PP4 Likely pathogenic

Abbreviations: AF, allele frequency; ACMG, American College of Medical Genetics and Genomics; gnomAD, Genome Aggregation Database; ABraOM, Online Archive of Brazilian Mutations; ACMG criteria are given according to reference number 10; PS4, pathogenic strong 4; PM2, pathogenic moderate 2; PM5, pathogenic moderate 5; PP1, pathogenic supporting 1; PP2, pathogenic supporting 2; PP3, pathogenic supporting 3; PP4, pathogenic supporting 4; PP5, pathogenic supporting 5; BP4, benign supporting 4.