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. Author manuscript; available in PMC: 2021 Aug 6.
Published in final edited form as: Cell Stem Cell. 2020 Jun 8;27(2):270–283.e7. doi: 10.1016/j.stem.2020.05.007

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
chicken anti-GFP Abcam ab13970; RRID:AB_300798
mouse anti-BrdU (MoBU-1) Invitrogen B35128; RRID:AB_2536432
rabbit anti-Keratin 10 (Poly19054) BioLegend 905403; RRID:AB_2749902
mouse anti-Puromycin (12D10) Millipore MABE343; RRID:AB_2566826
guinea pig anti-Keratin 5 Origene BP5006
CD49f/α6-Integrin-PerCP (GoH3) BioLegend 313617 RRID:AB_1575054
CD326/EpCAM-APC (G8.8) BD Biosciences 563478; RRID:AB_2738234
mouse anti-EIF2B5 (B-7) Santa Cruz Biotechnology Sc-55558; RRID:AB_831253
mouse anti-β-Actin (2D4H5) Proteintech 66009; RRID:AB_2687938
mouse anti-EIF2α (L57A5) Cell Signaling 2103S; RRID:AB_836874
rabbit anti-phospho-EIF2α Ser51 (119A11) Cell Signaling 3597S; RRID:AB_390740
rabbit anti-FBXO32 (EPR9148(2)) Abcam ab168372
mouse anti-V5 (V5-10) Sigma-Aldrich V8012; RRID:AB_261888
Bacterial and Virus Strains
TRC1.0 Lentiviral Mouse Genome shRNA Library Sigma-Aldrich Discontinued, now MISSION shRNA Library
Biological Samples
Chemicals, Peptides, and Recombinant Proteins
DMEM Gibco 11995-065
UltraCULTURE media Lonza 12-725F
E media Nowak and Fuchs, 2009 N/A
Fetal bovine serum Gibco 16000-044
Polybrene Sigma 107689-10G
Trypsin-EDTA GIBCO 25200-056
Chelex 100 Bio-Rad 1422822
M.O.M. Blocking Reagent Vector MKB-22113
ProLong Gold Antifade Mountant ThermoFisher P36930
Antigen Unmasking Solution, Citric Acid Based Vector H-3300-250
RIPA Lysis Buffer System Santa Cruz Biotech Sc-24948
ISRIB Sigma-Aldrich SML0843
SuperSignal Wester Pico PLUS Chemiluminescent Substrate Thermo Fisher 34577
iScript Reverse Transcription Supermix Bio-Rad 1708840
SYBR Green PCR Master Mix Thermo Fisher 4309155
Lipofectamine 3000 Thermo Fisher L3000001
BrdU Invitrogen B23151
EdU Invitrogen A10044
Puromycin Thermo Fisher A11138-03
Cyclohexamide Sigma-Aldrich C7698
Bortezomib Sigma-Aldrich 504314
Dispase Corning 354235
Mitomycin C Sigma-Aldrich M4287
Critical Commercial Assays
Click-iT EdU Alexa Fluor 555 Imaging Kit Invitrogen C10338
20S Proteasome Activity Assay Millipore APT280
PE Active Caspase-3 Apoptosis Kit BD Biosciences 550914
DNeasy Blood & Tissue Kit Qiagen 69504
RNeasy Plus Mini Kit Qiagen 74134
Q5 Site-Directed Mutagenesis Kit NEB E0554S
Pierce BCA Protein Assay Kit Thermo Fisher 23225
Dual-Luciferase Reporter Assay System Promega E1910
TruSeq Ribo Profile (Mammalian) Library Prep Kit Illumina RPHMR12126
Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat) Illumina MRZH11124
Deposited Data
Raw and analyzed data This paper GEO GSE 126660
Mouse reference genome NCBI build 38 (mm10) Genome Reference Consortium https://www.ncbi.nlm.nih.gov/assembly/GCF_000001635.20/
Experimental Models: Cell Lines
Mouse: WT primary keratinocytes This paper N/A
Mouse: HrasG12V primary keratinocytes This paper N/A
Mouse: NIH/3T3 cells ATCC CRL-1658; RRID:CVCL_0594
Human: 293TN cells System Biosciences LV900A-1
Experimental Models: Organisms/Strains
Mouse: Rosa26YFPFYP The Jackson Laboratory 006148; RRID:IMSR_JAX:006148
Mouse: Rosa26mT/mG The Jackson Laboratory 007676; RRID:IMSR_JAX:007676
Mouse: FR-HrasG12V Donated by James A. Fagin N/A
Oligonucleotides
See Table S6 for shRNA and PCR primer sequences
Recombinant DNA
Plasmid: pLKO.1 Addgene 10878; RRID:Addgene_10878
Plasmid: pLKO.1-Cre Addgene 25997; RRID:Addgene_25997
Plasmid: pLX-Cre-EF1α ORF vector Ying et al., 2018 N/A
Plasmid: pLX-shRNA-Cre-EF1α ORF vector This paper N/A
Plasmid: pMD2.G Addgene 12259; RRID:Addgene_12259
Plasmid psPAX2 Addgene 12260; RRID:Addgene_12260
Plasmid: CMV-Luc2CP/ARE Addgene 62857; RRID:Addgene_62857
Software and Algorithms
FASTX-Toolkit Hannon Lab http://hannonlab.cshl.edu/fastx_toolkit/
BWA Li et al., 2009 http://bio-bwa.sourceforge.net/
Samtools Li et al., 2009 http://samtools.sourceforge.net/
DESeq2 Love et al., 2014 https://bioconductor.org/packages/release/bioc/html/DESeq2.html
Bowtie Langmead et al., 2009 https://bioconductor.org/packages/release/bioc/html/Rbowtie.html
TopHat2 Kim et al., 2013 https://ccb.jhu.edu/software/tophat/index.shtml
HTSeq Anders et al., 2015 https://htseq.readthedocs.io/en/release_0.10.0/
Xtail Xiao et al., 2016 https://github.com/xryanglab/xtail
edgeR Robinson et al., 2010 https://bioconductor.org/packages/release/bioc/html/edgeR.html
riboseqR Chung et al., 2015 http://bioconductor.org/packages/release/bioc/html/riboSeqR.html
Ingenuity Pathway Analysis Qiagen https://www.qiagenbioinformatics.com/products/ingenuity-pathway-analysis/
Imaris Bitplane https://imaris.oxinst.com/
ImageJ Abramoff et al., 2004 https://imagej.nih.gov/ij/
Prism 7 GraphPad https://www.graphpad.com/
MEME Bailey et al., 2009 http://meme-suite.org/tools/meme
FIMO Grant et al., 2011 http://meme-suite.org/tools/fimo
ZEN Zeiss https://www.zeiss.com/microscopy/us/products/microscope-software/zen-lite.html