Figure 5. Original and 3D reconstructed atlas comparison across the ADMBA.

(A-H) Representative axial planes from all atlases. For each pair of images, a plane of the original (left) atlas is depicted next to the refined (right) atlas after undergoing the full refinement pipeline. Complete atlases before and after refinement are shown as movies in Figure 5—videos 1–16.

Figure 5—figure supplement 1. Piecewise 3D affine transformation of the spinal cord in the E11.5 atlas.

(column 1) The distal cord of the ADMBA E11.5 atlas specimen is skewed laterally as seen in the axial view (top), preventing mirroring without duplicating the distal cord (bottom). (columns 2–4) A series of three successive piecewise affine transformations straightened the cord to avoid duplication with mirroring.

Figure 5—video 1. Original ADMBA E11.5 Atlas.

Download video file ^{(1.3MB, mp4)}

Figure 5—video 2. 3D reconstructed ADMBA E11.5 Atlas.

Download video file ^{(930.7KB, mp4)}

Figure 5—video 3. Original ADMBA E13.5 Atlas.

Download video file ^{(6.4MB, mp4)}

Figure 5—video 4. 3D reconstructed ADMBA E13.5 Atlas.

Download video file ^{(1.7MB, mp4)}

Figure 5—video 5. Original ADMBA E15.5 Atlas.

Download video file ^{(15.2MB, mp4)}

Figure 5—video 6. 3D reconstructed ADMBA E15.5 Atlas.

Download video file ^{(2.3MB, mp4)}

Figure 5—video 7. Original ADMBA E18.5 Atlas.

Download video file ^{(2.5MB, mp4)}

Figure 5—video 8. 3D reconstructed ADMBA E18.5 Atlas.

Download video file ^{(1.8MB, mp4)}

Figure 5—video 9. Original ADMBA P4 Atlas.

Download video file ^{(5.6MB, mp4)}

Figure 5—video 10. 3D reconstructed ADMBA P4 Atlas.

Download video file ^{(3.2MB, mp4)}

Figure 5—video 11. Original ADMBA P14 Atlas.

Download video file ^{(6.5MB, mp4)}

Figure 5—video 12. 3D reconstructed ADMBA P14 Atlas.

Download video file ^{(4.4MB, mp4)}

Figure 5—video 13. Original ADMBA P28 Atlas.

Download video file ^{(10.5MB, mp4)}

Figure 5—video 14. 3D reconstructed ADMBA P28 Atlas.

Download video file ^{(9.2MB, mp4)}

Figure 5—video 15. Original ADMBA P56 Atlas.

Download video file ^{(8MB, mp4)}

Figure 5—video 16. 3D reconstructed ADMBA P56 Atlas.

Download video file ^{(6MB, mp4)}