| Anatomy |
| FSL Anat (T1) |
10.25663/brainlife.app.273 |
brainlife/validator-neuro-anat |
master |
| Tissue-type segmentation |
10.25663/brainlife.app.239 |
brainlife/app-mrtrix3-5tt |
binarize |
| Freesurfer |
10.25663/bl.app.0 |
brainlife/validator-neuro-freesurfer |
master |
| Freesurfer |
10.25663/bl.app.0 |
brainlife/app-freesurfer |
1.11 |
| Freesurfer |
10.25663/bl.app.0 |
brainlife/app-freesurfer |
master |
| Freesurfer |
10.25663/bl.app.0 |
brainlife/app-freesurfer |
1.8 |
| Segment thalamic nuclei |
10.25663/brainlife.app.222 |
brainlife/validator-neuro-freesurfer |
master |
| pRFs/Benson14-Retinotopy |
10.25663/brainlife.app.187 |
davhunt/app-benson14-retinotopy |
master |
| Generate ROIs for Visual White Matter Tracking in dMRI Space (Benson pRF) |
10.25663/brainlife.app.349 |
brainlife/validator-neuro-rois |
master |
| Generate ROIs for Visual White Matter Tracking in dMRI Space (Benson pRF) |
10.25663/brainlife.app.349 |
brain-life/app-roiGenerator |
optic-radiation-v1.0 |
| Diffusion |
| mrtrix3 preprocess |
10.25663/bl.app.68 |
brainlife/validator-neuro-dwi |
master |
| Fit Constrained Deconvolution Model for Tracking |
10.25663/brainlife.app.238 |
bacaron/app-mrtrix3-act |
csd_generation-v1.0 |
| mrtrix3—Anatomically Constrained Tractography (ACT) |
10.25663/bl.app.101 |
brainlife/validator-neuro-track |
master |
| White Matter Anatomy Segmentation |
10.25663/brainlife.app.188 |
brainlife/validator-neuro-wmc |
master |
| mrtrix3—Anatomically Constrained Tractography (ACT) |
10.25663/bl.app.101 |
brain-life/app-mrtrix3-act |
1.4 |
| Plot response function |
10.25663/brainlife.app.311 |
brainlife/app-plot-response |
v1.0 |
| Track the Human Optic RAdiation (THORA)—mrtrix3 iFOD2 (dwi) |
10.25663/brainlife.app.347 |
brainlife/validator-neuro-track |
master |
| Track the Human Optic RAdiation (THORA)—mrtrix3 iFOD2 (dwi) |
10.25663/brainlife.app.347 |
brainlife/app-mrtrix3-roi2roi-tracking |
thora-v1.0 |
| Track the Human Optic RAdiation (THORA)—mrtrix3 iFOD2 (dwi) |
10.25663/brainlife.app.347 |
brainlife/validator-neuro-wmc |
master |
| Remove Tract Outliers |
10.25663/brainlife.app.195 |
brainlife/validator-neuro-wmc |
master |
| Tract Analysis Profiles |
10.25663/brainlife.app.361 |
brain-life/app-tractanalysisprofiles |
1.8 |
| tract analysis profiles |
10.25663/brainlife.app.361 |
brainlife/validator-neuro-tractprofile |
master |
| Quality assurance |
| Generate figures of whole-brain tractogram (tck) |
10.25663/brainlife.app.310 |
kitchell/app-AFQ_figures |
tractogram-v1.0 |
| Generate images of DWI |
10.25663/brainlife.app.298 |
brainlife/app-slicer-fsl |
master-app-v1.0.0 |
| Generate images of DWI overlaid on T1 |
10.25663/brainlife.app.309 |
brainlife/app-slicer-fsl |
dwi-t1-v1.0.0 |
| Generate images of T1 |
10.25663/brainlife.app.300 |
brainlife/app-slicer-fsl |
master-app-v1.0.0 |
| Generate images of tensor |
10.25663/brainlife.app.302 |
brainlife/app-slicer-fsl |
tensor-v1.0.0 |
| Generate images of tissue type masks |
10.25663/brainlife.app.312 |
brainlife/app-slicer-fsl |
5tt-v1.0.0 |
| Compute SNR on Corpus Callosum |
10.25663/brainlife.app.120 |
davhunt/app-snr_in_cc |
plot |
| Plot response function |
10.25663/brainlife.app.311 |
brainlife/app-plot-response |
v1.0 |
| Tractography quality check |
10.25663/brainlife.app.189 |
brainlife/app-tractographyQualityCheck |
1.2 |
