TABLE 3.
Free energy components of the binding energies (kcal/mol).
| PDB-ID | ΔEvdw | ΔEele | ΔGB | ΔNP | ΔH | IE | ΔG | ΔG (exp)a |
|---|---|---|---|---|---|---|---|---|
| 2hvc | 12.08 ± 0.19 | 0.66 ± 0.23 | 6.88 ± 0.76 | 0.75 ± 0.01 | 20.37 ± 0.81 | −1.78 ± 0.05 | 18.59 ± 0.78 | 12.05 |
| 3b65 | 23.23 ± 0.60 | 3.75 ± 0.31 | −5.16 ± 0.18 | 1.33 ± 0.02 | 23.15 ± 0.31 | −4.58 ± 0.49 | 18.57 ± 0.60 | 12.65 |
| 3b67 | 19.77 ± 0.17 | 6.38 ± 0.34 | −5.91 ± 0.43 | 1.15 ± 0.04 | 21.39 ± 0.34 | −3.75 ± 0.25 | 17.64 ± 0.51 | 12.09 |
| 3b5r | 17.83 ± 0.52 | 3.25 ± 0.14 | −4.46 ± 0.21 | 0.92 ± 0.03 | 17.55 ± 0.34 | −3.71 ± 0.25 | 13.84 ± 0.32 | 11.97 |
| 3b66 | 23.26 ± 0.27 | 4.37 ± 0.15 | −6.30 ± 0.29 | 1.48 ± 0.03 | 22.81 ± 0.39 | −5.27 ± 0.34 | 17.55 ± 0.46 | 11.75 |
| 3b68 | 19.27 ± 0.32 | 5.70 ± 0.27 | −6.57 ± 0.35 | 0.99 ± 0.03 | 19.39 ± 0.40 | −3.48 ± 0.33 | 15.91 ± 0.33 | 11.47 |
| 2axa | 20.03 ± 0.28 | 5.62 ± 0.15 | −5.96 ± 0.13 | 1.17 ± 0.03 | 20.87 ± 0.24 | −4.37 ± 0.27 | 16.49 ± 0.09 | 11.22 |
| 2ax6 | 11.83 ± 0.32 | 3.14 ± 0.15 | −2.48 ± 0.28 | 0.54 ± 0.04 | 13.03 ± 0.20 | −1.44 ± 0.15 | 11.60 ± 0.24 | 10.33 |
| 3g0w | 22.45 ± 0.15 | 3.59 ± 0.08 | −1.22 ± 0.18 | 1.28 ± 0.02 | 26.10 ± 0.32 | −3.24 ± 0.35 | 22.86 ± 0.37 | 13.00 |
| 1xnn | 24.32 ± 0.28 | 4.01 ± 1.02 | −4.19 ± 0.64 | 1.28 ± 0.02 | 25.42 ± 0.69 | -3.64 ± 0.18 | 21.78 ± 0.77 | 12.70 |
| 5cj6 | 18.78 ± 0.11 | 1.68 ± 0.12 | 0.28 ± 0.18 | 1.10 ± 0.01 | 21.84 ± 0.21 | −2.31 ± 0.10 | 19.52 ± 0.25 | 11.87 |
| 2nw4 | 19.55 ± 0.25 | 1.73 ± 0.14 | −3.75 ± 0.14 | 0.98 ± 0.03 | 18.50 ± 0.31 | −2.83 ± 0.18 | 15.68 ± 0.42 | 11.85 |
| 2ihq | 19.19 ± 0.26 | 2.71 ± 0.14 | −3.85 ± 0.12 | 0.97 ± 0.01 | 19.03 ± 0.12 | −2.50 ± 0.16 | 16.52 ± 0.20 | 11.60 |
| 1i37 | 21.10 ± 0.19 | 5.93 ± 0.08 | −2.43 ± 0.35 | 1.43 ± 0.02 | 26.02 ± 0.34 | −3.80 ± 0.17 | 22.22 ± 0.50 | 13.07 |
| 2ao6 | 21.10 ± 0.27 | 6.59 ± 0.10 | −1.16 ± 0.10 | 1.22 ± 0.01 | 27.75 ± 0.33 | −2.94 ± 0.09 | 24.81 ± 0.41 | 12.68 |
aThe experimental value is obtained by using the relation ΔG (exp) = −RT ln Ki/Kd at T = 298K and multiplied by a minus sign.