TABLE 4.
Binding Free Energies (kcal/mol) calculated by ASIE method compared to the experimental data (kcal/mol).
| ASIE | MM/GBSAa | EXPb | |||
|---|---|---|---|---|---|
| PDB-ID | ΔH | −TΔS | ΔG | ΔH | ΔG (exp) |
| 2hvc | 20.37 ± 0.81 | −1.78 ± 0.05 | 18.59 ± 0.78 | 8.95 ± 0.83 | 12.05 |
| 3b65 | 23.15 ± 0.31 | −4.58 ± 0.49 | 18.57 ± 0.60 | 48.65 ± 0.19 | 12.65 |
| 3b67 | 21.39 ± 0.34 | −3.75 ± 0.25 | 17.64 ± 0.51 | 38.58 ± 0.70 | 12.09 |
| 3b5r | 17.55 ± 0.34 | −3.71 ± 0.25 | 13.84 ± 0.32 | 40.28 ± 0.80 | 11.97 |
| 3b66 | 22.81 ± 0.39 | −5.27 ± 0.34 | 17.55 ± 0.46 | 40.23 ± 0.57 | 11.75 |
| 3b68 | 19.39 ± 0.40 | −3.48 ± 0.33 | 15.91 ± 0.33 | 42.37 ± 1.18 | 11.47 |
| 2axa | 20.87 ± 0.24 | −4.37 ± 0.27 | 16.49 ± 0.09 | 38.14 ± 0.51 | 11.22 |
| 2ax6 | 13.03 ± 0.20 | −1.44 ± 0.15 | 11.60 ± 0.24 | 29.56 ± 0.40 | 10.33 |
| 3g0w | 26.10 ± 0.32 | −3.24 ± 0.35 | 22.86 ± 0.37 | 35.02 ± 0.89 | 13.00 |
| 1xnn | 25.42 ± 0.69 | −3.64 ± 0.18 | 21.78 ± 0.77 | 44.45 ± 0.57 | 12.70 |
| 5cj6 | 21.84 ± 0.21 | −2.31 ± 0.10 | 19.52 ± 0.25 | 37.77 ± 0.55 | 11.87 |
| 2nw4 | 18.50 ± 0.31 | −2.83 ± 0.18 | 15.68 ± 0.42 | 40.59 ± 0.67 | 11.85 |
| 2ihq | 19.03 ± 0.12 | −2.50 ± 0.16 | 16.52 ± 0.20 | 41.39 ± 0.48 | 11.60 |
| 1i37 | 26.02 ± 0.34 | −3.80 ± 0.17 | 22.22 ± 0.50 | 47.24 ± 0.52 | 13.07 |
| 2ao6 | 27.75 ± 0.33 | −2.94 ± 0.09 | 24.81 ± 0.41 | 48.79 ± 0.27 | 12.68 |
| R | 0.87 | 0.85 | 0.34 | ||
| MAE | 9.53 | 6.22 | 27.19 | ||
| RMSE | 10.03 | 6.85 | 28.31 |
aMM/GBSA results added a minus sign.
bThe experimental value is obtained by using the relation ΔG (exp) = −RT ln Ki/Kd at T = 298 K and multiplied by a minus sign.