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. 2021 Mar 12;8:646524. doi: 10.3389/fmolb.2021.646524

TABLE 4.

Binding Free Energies (kcal/mol) calculated by ASIE method compared to the experimental data (kcal/mol).

ASIE MM/GBSAa EXPb
PDB-ID ΔH −TΔS ΔG ΔH ΔG (exp)
2hvc 20.37 ± 0.81 −1.78 ± 0.05 18.59 ± 0.78 8.95 ± 0.83 12.05
3b65 23.15 ± 0.31 −4.58 ± 0.49 18.57 ± 0.60 48.65 ± 0.19 12.65
3b67 21.39 ± 0.34 −3.75 ± 0.25 17.64 ± 0.51 38.58 ± 0.70 12.09
3b5r 17.55 ± 0.34 −3.71 ± 0.25 13.84 ± 0.32 40.28 ± 0.80 11.97
3b66 22.81 ± 0.39 −5.27 ± 0.34 17.55 ± 0.46 40.23 ± 0.57 11.75
3b68 19.39 ± 0.40 −3.48 ± 0.33 15.91 ± 0.33 42.37 ± 1.18 11.47
2axa 20.87 ± 0.24 −4.37 ± 0.27 16.49 ± 0.09 38.14 ± 0.51 11.22
2ax6 13.03 ± 0.20 −1.44 ± 0.15 11.60 ± 0.24 29.56 ± 0.40 10.33
3g0w 26.10 ± 0.32 −3.24 ± 0.35 22.86 ± 0.37 35.02 ± 0.89 13.00
1xnn 25.42 ± 0.69 −3.64 ± 0.18 21.78 ± 0.77 44.45 ± 0.57 12.70
5cj6 21.84 ± 0.21 −2.31 ± 0.10 19.52 ± 0.25 37.77 ± 0.55 11.87
2nw4 18.50 ± 0.31 −2.83 ± 0.18 15.68 ± 0.42 40.59 ± 0.67 11.85
2ihq 19.03 ± 0.12 −2.50 ± 0.16 16.52 ± 0.20 41.39 ± 0.48 11.60
1i37 26.02 ± 0.34 −3.80 ± 0.17 22.22 ± 0.50 47.24 ± 0.52 13.07
2ao6 27.75 ± 0.33 −2.94 ± 0.09 24.81 ± 0.41 48.79 ± 0.27 12.68
R 0.87 0.85 0.34
MAE 9.53 6.22 27.19
RMSE 10.03 6.85 28.31

aMM/GBSA results added a minus sign.

bThe experimental value is obtained by using the relation ΔG (exp) = −RT ln Ki/Kd at T = 298 K and multiplied by a minus sign.