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Looking at a difficult case: the potassium atoms within the potassium channel (PDB ID: 1BL8). (left) Bond perception performed by the Avogadro software5 (version 1.1.1) (using the OpenBabel library6 (version 2.3.2)): number of bonds perceived, 2918. (right) Bond perception performed by Proxima: number of bonds perceived, 2897.
