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. 2021 Feb 27;10(3):451. doi: 10.3390/plants10030451

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© 2021 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Bar plots of the full-length LTR-RE (a) and modified bases (4mC and 6mA, b) distributions according to their proximity to the centromere of the 13 F. carica pseudo-chromosomes in the Copia and Gypsy superfamilies. Starting from the center of the centromeric regions (point 0–3 on the x axis), 3 Mbp bins upstream, downstream, and reverse were considered. The distributions of each superfamily were normalized based on the total number of elements (a) or the total number of modified bases (b).