| TE | transposon |
| RE | retrotransposon |
| LTR | long terminal repeat |
| 5mC | 5-methyl cytosine |
| SMRT | single-molecule real-time |
| PacBio | Pacific Biosciences |
| 4mC | N4-methylcytosine |
| 6mA | N6-methyladenine |
| GO | Gene Ontology |
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