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. 2021 Mar 27;106:228–236. doi: 10.1016/j.ijid.2021.03.068

Figure 5.

Figure 5

Phylogenetic tree based on SARS-CoV-2 full-length genomes.

A total of 744 genomes of SARS-CoV-2 were integrated in a phylogenetic analysis. All genomes were aligned using MAFFT version 7 (Katoh and Standley, 2013). The phylogenetic tree was reconstructed using IQ-TREE with the GTR model, with 1000 ultrafast bootstrap repetitions (Minh et al., 2020), and was visualized with iTOL (Interactive Tree Of Life; https://itol.embl.de/) (Letunic and Bork, 2016). DK, Denmark; NTH, The Netherlands.