Table 3.
Two-populations model. Optimal model parameters (median and interquartile range). Euclidean-norm minimization with . Fixed fraction of hospitalized who died (see text for justification). Variation range used in the optimization algorithm (initial parameter and initial-condition guesses were uniformly sampled within the ranges shown).
| Parameter | Symbol | Median (interquartile range) | Initial value |
|---|---|---|---|
| Population | 127,575,528 | ||
| Initial populations (young) | () | (122,472,507 (); 1370; 132; 2; 0; 3) | |
| Initial populations (old) | () | (5,103,021 (); 207; 39; 2; 0; 2) | |
| Transmission rate () [per day] | a | 0.3085 (0.2862–0.3295) | |
| Transmission rate () [per day] | a | 0.2897 (0.2725–0.3126) | |
| Transmission rate () [per day] | a | 0.5605 (0.5419–0.5796) | |
| Transmission rate () [per day] | a | 0.6471 (0.6297–0.6625) | |
| Social distancing () effect | 0.5283 (0.5110–0.5458) | ||
| Social distancing () effect | 0.5345 (0.5121–0.5533) | ||
| Social distancing () effect | 0.5606 (0.5407–0.5790) | ||
| Social distancing () effect | 0.6068 (0.5876–0.6250) | ||
| Latent period [days] | 2.9699 (2.9673–2.9727) | ||
| Preclinical period [days] | 2.4695 (2.4678–2.4711) | ||
| A/P partitioning () | 0.3710 (0.3405–0.3996) | ||
| A/P partitioning () | 0.2581 (0.2442–0.2740) | ||
| Infectivity period (I, ) [days] | 4.1815 (4.1167–4.2442) | ||
| Infectivity period (I, ) [days] | 6.6060 (6.4495–6.7548) | ||
| Infectivity period (A, ) [days] | 7.1888 (7.1049–7.2790) | ||
| Infectivity period (A, ) [days] | 7.3453 (7.3183–7.3748) | ||
| Conversion fraction (I to H, R, ) | 0.2919 (0.2874–0.2965) | ||
| Conversion fraction (I to H, R, ) | 0.6438 (0.6370–0.6499) | ||
| Recovery period (H to R, ) [days] | 7.8047 (7.6836–7.9446) | ||
| Recovery period (H to R, ) [days] | 11.0976 (10.9733–11.2296) | ||
| H to D period () [days] | 6.8216 (6.7721–6.8818) | ||
| H to D period () [days] | 10.7787 (10.6725–10.8327) | ||
| Initial population fraction (E, ) | 2.0459 (2.0077–2.1059) | ||
| Initial population fraction (E, ) | 1.9938 (1.9443–2.0433) | ||
| Initial population fraction (A, ) | 2.0481 (2.0111–2.1125) | ||
| Initial population fraction (A, ) | 2.0085 (1.9651–2.0669) | ||
| Initial population fraction (P, ) | 0.5487 (0.5316–0.5677) | ||
| Initial population fraction (P, ) | 0.4481 (0.4284–0.4669) | ||
The reported transmission rates have been multiplied by . They should be normalized by the initial population when used in the ODE model.