Skip to main content
. 2021 Mar 6;12(3):377. doi: 10.3390/genes12030377

Table 1.

Outer membrane proteins annotated in the pangenome, together with the Ka/Ks ratio for both +1 and -2 frames, and the group that they belong. The gene name is that annotated by the functional annotator Sma3s. A hyphen symbol appears when the ratio could not be calculated.

Gene Group Ratio(+1) Ratio(-2) Gene Group Ratio(+1) Ratio(-2) Gene Group Ratio(+1) Ratio(-2)
alpB Core - - hopH Core 0.905 HPAKL86_04155 Singleton - -
babB Singleton - - hopI Core 0.872 0.939 HPAKL86_05700 Cloud 0.275 0.326
babC Singleton - - hopK Core 0.903 1.272 HPY1089_07465 Accessory 0.876 0.870
bamD Core 0.698 0.857 hopL Core 0.311 0.893 jhp_0663 Core 0.877 1.065
fecA Core - - hopM Singleton 1.001 - jhp_1360 Core 0.960
fecA2 Accessory 1.139 hopP Accessory - - omp13 Singleton 0.125 0.243
frpB Core 0.732 0.907 hopZ Accessory - - omp17 Singleton 0.042 0.219
hefD Core 0.114 0.240 horA Accessory - 1.746 omp21 Singleton 0.255 0.389
hefG Core 0.228 0.334 horB Core 0.039 0.126 omp22 Singleton 1.225 -
hofB Core 1.253 1.742 horC Core 0.124 0.244 omp24 Singleton 0.870 0.967
hofC Core 0.115 0.233 horE Core 0.041 0.218 omp25 Singleton 0.922 0.911
hofE Core 0.370 0.536 horF Core 0.102 0.182 omp26 Singleton 0.186 0.370
hofF Core 0.080 0.205 horG Core 0.238 0.360 omp33 Singleton 0.164 0.302
hofG Core 0.753 0.889 horH Core 0.245 0.288 omp4 Singleton 0.316 0.367
homC Core - - horI Core 0.210 0.487 omp5 Singleton - -
homD Core 1.010 0.830 horJ Core 0.125 0.216 ompP1 Core 0.799 0.989
hopA Core 0.907 0.716 horL Core - 1.066 sabA Singleton - -
hopD Core 0.661 HP_1426 Accessory 0.928 - sabB Singleton 0.346 0.537
hopE Core 0.088 0.132 hp908_0703 Core 0.050 0.195 unknown40 Accessory 1.029 1.009
hopF Core 0.270 0.352 hp908_1474 Core 0.169 0.273 vlpC Accessory - -