E6 variants of HPV 16 regulate the activity of enzymes related to metabolic reprogramming. Variants of the AA sublineage increase glucose entry into the cell, increase glyceraldehyde-3-phosphate dehydrogenase (GAPDH), PKM2, and increase lactate release. Variants of the As sublineage increase enolase 1 (ENO1) levels. Mitochondrial metabolism is decreased by variants of the AA and As sublineages. Variants of the AA sublineage decrease IDH2 in the tricarboxylic acid cycle (TCA), whereas variants of the As sublineage decrease AIFM2 and cytochrome c in the electron transport chain (ETC). Variants of the AA sublineage increase the carbonic IX (CAIX) enzyme levels, essential for balancing the pH of the tumor microenvironment induced by aerobic glycolysis. Arrows in black indicate activation and positive regulation as appropriate. The thick black arrows indicate the increase in the product of the enzymatic reaction. Arrows T indicate inhibition.