Table 2. Software, sub-commands and parameters used for pyani, sourmash, FastANI and LINflow.
| Software | Version | Parameters |
|---|---|---|
| Pyani1 | 0.2.9 | -m ANIb -worker 100 |
| sourmash | 2.0.0 | -k 21, 51 -n 2000 |
| FastANI | 1.2 | -k 16 -t 1 |
Note:
Multiprocessing was enabled.
| Software | Version | Parameters |
|---|---|---|
| Pyani1 | 0.2.9 | -m ANIb -worker 100 |
| sourmash | 2.0.0 | -k 21, 51 -n 2000 |
| FastANI | 1.2 | -k 16 -t 1 |
Note:
Multiprocessing was enabled.