Table 2.
Characteristics of contigs detected with different sequencing and assembly strategies in five E. coli isolates. Circularized contigs are presented in bold.
| 17-AB00050 | 17-AB00090 | 17-AB00432 | 17-AB00587 | 17-AB00639 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Number of Contigs (Plasmidal Content Relative to Total Contig Length) | Number of Circular Contigs/All Contigs < 10 kb | Longest Contig [bp] | Number of Contigs (Plasmidal Content Relative to Total Contig Length) | Number of Circular Contigs/Contigs < 10 kb | Longest Contig [bp] | Number of Contigs (Plasmidal Content Relative to Total Contig Length) | Number of Circular Contigs/Contigs < 10 kb | Longest Contig [bp] | Number of Contigs (Plasmidal Content Relative to Total Contig Length) | Number of Circular Contigs/Contigs < 10 kb | Longest Contig [bp] | Number of Contigs (Plasmidal Content Relative to Total Contig Length) | Number of Circular Contigs/Contigs < 10 kb | Longest Contig [bp] | |
| Unicycler-NextSeq | 466 (5.5%) | 2/2 | 341,211 | 186 (4.3%) | 3/3 | 502,527 | 159 (1.6%) | 0/0 | 314,433 | 201 (4.2%) | 0/0 | 485,939 | 183 (7.6%) | 2/2 | 340,946 |
| Flye-PacBio | 13 (4.6%) | 4/1 | 4094,393 | 6 (4.6%) | 6/2 | 5004,742 | 2 (2.1%) | 2/0 | 4,736,227 | 3 (4.4%) | 3/0 | 4,938,765 | 7 (7.9%) | 4/1 | 3,693,252 |
| Flye-ONT | 8 (5.3%) | 7/0 | 5,524,427 | 5 (4.6%) | 5/0 | 4,970,722 | 3 (2.7%) | 3/0 | 4,728,917 | 3 (4.4%) | 3/0 | 4,931,189 | 7 (8.3%) | 7/4 | 4,756,147 |
| Unicycler-PacBio/NextSeq | 27 (4.2%) | 6/2 | 4,341,057 | 7 (4.6%) | 7/3 | 5,004,751 | 3 (2.4%) | 3/0 | 4,736,229 | 3 (4.4%) | 3/0 | 4,938,758 | 13 (8.1%) | 7/2 | 4,763,387 |
| Unicycler-ONT/NextSeq | 22 (4.0%) | 6/2 | 5,533,851 | 7 (4.6%) | 7/3 | 5,004,751 | 3 (2.4%) | 3/0 | 4,736,229 | 3 (4.4%) | 3/0 | 4,938,758 | 9 (8.2%) | 9/2 | 4,763,387 |