Table 4.
Category | Gene ID | E-Value | Identity | ID | Log2 Fold Change | Arabi-Defline * | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
G 100 Gy | G 200 Gy | G 300 Gy | P 100 Gy | P 200 Gy | P 300 Gy | |||||||
Plant hormone | JA | Vigun05g272300 | 0 | 56.17 | AT1G55020 | 1.44 | 2.01 | 0.79 | 0.53 | 0.70 | 2.01 | lipoxygenase 1 |
JA | Vigun09g243000 | 0 | 64.68 | AT5G42650 | 0.08 | 0.36 | 0.18 | 0.52 | 0.32 | 1.06 | allene oxide synthase | |
JA | Vigun10g168900 | 0 | 57.01 | AT1G55020 | 0.57 | 0.83 | 0.05 | 0.00 | −0.25 | 1.27 | lipoxygenase 1 | |
JA | Vigun11g024700 | 5 × 10−131 | 51.83 | AT2G06050 | 0.47 | 0.46 | 0.24 | 0.99 | 0.27 | 1.05 | 12-oxophytodienoate reductase 2 | |
JA | Vigun11g025000 | 5 × 10−127 | 50.52 | AT2G06050 | 0.42 | 0.47 | 0.33 | 1.00 | 0.26 | 1.12 | 12-oxophytodienoate reductase 2 | |
JA | Vigun09g060800 | 2 × 10−14 | 53.06 | AT4G28910 | −0.15 | −0.34 | −0.45 | −0.83 | −0.87 | −1.04 | ABI five binding protein 3 | |
SA | Vigun01g111100 | 3 × 10−126 | 54.47 | AT3G57260 | 1.01 | 1.49 | 0.98 | 0.22 | 0.56 | 1.47 | beta-1,3-glucanase 1 | |
SA | Vigun01g111300 | 1 × 10−101 | 56.49 | AT3G57260 | 1.24 | 1.70 | 1.29 | 0.31 | 0.61 | 1.57 | beta-1,3-glucanase 1 | |
SA | Vigun06g125400 | 1 × 10−16 | 55.56 | AT4G17500 | −0.65 | −0.88 | −1.02 | −0.32 | −1.00 | −1.36 | Integrase-type DNA-binding superfamily protein | |
SA | Vigun09g066100 | 9 × 10−12 | 53.42 | AT4G17500 | −0.19 | −0.29 | −0.96 | −0.24 | −1.43 | −1.40 | Integrase-type DNA-binding superfamily protein | |
SA | Vigun10g147000 | 1 × 10−16 | 51.47 | AT4G17500 | −0.13 | −0.40 | −0.58 | −0.39 | −0.50 | −1.27 | Integrase-type DNA-binding superfamily protein | |
SA | Vigun11g037800 | 1 × 10−102 | 52.38 | AT3G57260 | −0.30 | −0.70 | −0.45 | −0.34 | −0.57 | −1.34 | Glycosyl hydrolase superfamily protein | |
SA | Vigun05g118000 | 5 × 10−21 | 59.65 | AT3G01080 | 0.23 | 0.32 | 0.77 | −0.02 | 1.07 | 0.64 | WRKY DNA-binding protein 49 | |
SA | Vigun06g122600 | 2 × 10−14 | 51.72 | AT3G01080 | 0.36 | 0.20 | 0.36 | 1.15 | 0.78 | 0.75 | WRKY DNA-binding protein 30 | |
SA | Vigun08g112200 | 1 × 10−22 | 55.07 | AT2G40750 | 0.25 | −0.04 | 0.53 | 1.46 | 1.35 | 0.67 | WRKY DNA-binding protein 70 | |
SA | Vigun03g272400 | 3 × 10−100 | 55.98 | AT2G23620 | −0.26 | −0.52 | −0.96 | −0.27 | −1.11 | −1.08 | methyl esterase 1 | |
ETH | Vigun03g006800 | 8 × 10−152 | 73.4 | AT1G05010 | 0.11 | 0.43 | 0.29 | 0.37 | 0.66 | 1.20 | ethylene-forming enzyme | |
ETH | Vigun06g125400 | 1 × 10−18 | 54.29 | AT2G44840 | −0.65 | −0.88 | −1.02 | −0.32 | −1.00 | −1.36 | Integrase-type DNA-binding superfamily protein | |
ETH | Vigun10g147000 | 9 × 10−20 | 52 | AT2G44840 | −0.13 | −0.40 | −0.58 | −0.39 | −0.50 | −1.27 | Integrase-type DNA-binding superfamily protein | |
AUX | Vigun02g197800 | 4 × 10−161 | 60.91 | AT4G27070 | 0.50 | 0.57 | 0.18 | 0.53 | −0.18 | 1.19 | Pyridoxal-5\'-phosphate-dependent enzyme family protein | |
AUX | Vigun02g197900 | 2 × 10−166 | 60.14 | AT5G54810 | 0.45 | 0.66 | 0.05 | 0.52 | −0.20 | 1.19 | Pyridoxal-5\'-phosphate-dependent enzyme family protein | |
AUX | Vigun02g200300 | 5 × 10−167 | 62.79 | AT5G54810 | 0.45 | 0.68 | 0.04 | 0.53 | −0.18 | 1.21 | Pyridoxal-5\'-phosphate-dependent enzyme family protein | |
AUX | Vigun08g204500 | 0 | 75.13 | AT5G55250 | −0.31 | −0.25 | −0.77 | −0.19 | −1.08 | −0.47 | IAA carboxylmethyltransferase 1 | |
AUX | Vigun01g186200 | 1 × 10−121 | 51.34 | AT5G62000 | −0.08 | −0.11 | −0.39 | −0.45 | −1.19 | −0.77 | auxin response factor 2 | |
AUX | Vigun09g055300 | 3 × 10−89 | 62.02 | AT5G57090 | −0.35 | −0.86 | −0.83 | −0.58 | −1.29 | −1.67 | Auxin efflux carrier family protein | |
CK | Vigun01g223000 | 4 × 10−141 | 50.44 | AT5G05870 | 0.30 | 0.74 | 0.67 | 1.27 | 1.16 | 1.17 | UDP-Glycosyltransferase superfamily protein | |
CK | Vigun09g248900 | 0 | 68.08 | AT1G75450 | 0.07 | 0.19 | 0.42 | 1.41 | 1.15 | 0.49 | cytokinin oxidase 5 | |
CK | Vigun05g236200 | 1 × 10−15 | 54.55 | AT3G16857 | −0.10 | 0.12 | 0.79 | 0.63 | 1.30 | 0.59 | Homeodomain-like superfamily protein | |
BR | Vigun04g063600 | 0 | 74 | AT3G30180 | −0.13 | −0.33 | −0.98 | −0.98 | −1.36 | −0.84 | brassinosteroid-6-oxidase 2 | |
BR | Vigun10g199600 | 0 | 58.4 | AT2G07050 | −0.04 | −0.39 | 0.58 | 0.46 | 1.20 | 0.06 | Terpenoid cyclases family protein | |
ABA | Vigun01g111100 | 4 × 10−126 | 54.47 | AT3G57260 | 1.01 | 1.49 | 0.98 | 0.22 | 0.56 | 1.47 | beta-1,3-glucanase 1 | |
ABA | Vigun01g111300 | 1 × 10−101 | 56.49 | AT3G57260 | 1.24 | 1.70 | 1.29 | 0.31 | 0.61 | 1.57 | beta-1,3-glucanase 1 | |
ABA | Vigun02g108000 | 0 | 60.09 | AT2G29090 | 0.32 | 0.42 | −0.19 | 1.36 | 1.52 | −0.19 | cytochrome P450, family 707, subfamily A, polypeptide 1 | |
ABA | Vigun11g037800 | 1 × 10−102 | 52.38 | AT3G57260 | −0.30 | −0.70 | −0.45 | −0.34 | −0.57 | −1.34 | Glycosyl hydrolase superfamily protein | |
ABA | Vigun11g124400 | 1 × 10−63 | 54.36 | AT1G52340 | 2.33 | 2.85 | 1.92 | −0.30 | 1.23 | 2.07 | NAD(P)-binding Rossmann-fold superfamily protein | |
ABA | Vigun05g118000 | 2 × 10−19 | 56.14 | AT1G80840 | 0.23 | 0.32 | 0.77 | −0.02 | 1.07 | 0.64 | WRKY DNA-binding protein 49 | |
ABA | Vigun06g125400 | 3 × 10−14 | 67.86 | AT2G40220 | −0.65 | −0.88 | −1.02 | −0.32 | −1.00 | −1.36 | Integrase-type DNA-binding superfamily protein | |
ABA | Vigun08g103000 | 5 × 10−164 | 71.24 | AT3G50500 | −0.24 | −0.62 | −0.36 | −0.13 | −0.59 | −1.03 | Protein kinase superfamily protein | |
ABA | Vigun09g066100 | 1 × 10−10 | 59.65 | AT2G40220 | −0.19 | −0.29 | −0.96 | −0.24 | −1.43 | −1.40 | Integrase-type DNA-binding superfamily protein | |
ABA | Vigun10g147000 | 1 × 10−14 | 64.29 | AT2G40220 | −0.13 | −0.40 | −0.58 | −0.39 | −0.50 | −1.27 | Integrase-type DNA-binding superfamily protein | |
ABA | Vigun01g182800 | 0 | 66.91 | AT5G06530 | −0.13 | −0.11 | 0.52 | 0.73 | 1.42 | 0.86 | ABC-2 type transporter family protein | |
ABA | Vigun07g020000 | 0 | 78.09 | AT5G06530 | 0.07 | 0.42 | 0.80 | −0.45 | 1.19 | 0.45 | ABC-2 type transporter family protein | |
ABA | Vigun07g208100 | 0 | 61.09 | AT1G71960 | −0.49 | −1.16 | −0.86 | −0.53 | −0.99 | −0.53 | ATP-binding cassette family G25 | |
GA | Vigun01g203100 | 2 × 10−30 | 54.39 | AT1G09530 | −0.20 | −0.80 | −1.10 | 0.19 | −0.92 | −0.80 | phytochrome interacting factor 3 | |
GA | Vigun11g176000 | 1 × 10−16 | 50 | AT1G09530 | 0.03 | 0.37 | 0.59 | 0.67 | 1.16 | 0.38 | cryptochrome-interacting basic-helix-loop-helix 1 | |
TF | ARR-B | Vigun05g236200 | 2 × 10−15 | 54.24 | Vun001281 | −0.10 | 0.12 | 0.79 | 0.63 | 1.30 | 0.59 | Homeodomain-like superfamily protein |
B3 | Vigun01g186200 | 5 × 10−85 | 65.37 | Vun008946 | −0.08 | −0.11 | −0.39 | −0.45 | −1.19 | −0.77 | auxin response factor 2 | |
bHLH | Vigun01g203100 | 3 × 10−22 | 67.21 | Vun004469 | −0.20 | −0.80 | −1.10 | 0.19 | −0.92 | −0.80 | phytochrome interacting factor 3 | |
bHLH | Vigun02g030100 | 1 × 10−136 | 100 | Vun010029 | −0.07 | −0.03 | 0.69 | 0.45 | 1.28 | 0.39 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | |
bHLH | Vigun11g176000 | 0 | 99.73 | Vun001364 | 0.03 | 0.37 | 0.59 | 0.67 | 1.16 | 0.38 | cryptochrome-interacting basic-helix-loop-helix 1 | |
bZIP | Vigun05g188500 | 3 × 10−22 | 51.55 | Vun006014 | 0.60 | 0.64 | 0.77 | 0.99 | 1.17 | 0.15 | Basic-leucine zipper (bZIP) transcription factor family protein | |
bZIP | Vigun05g211100 | 1 × 10−22 | 52.58 | Vun006014 | 0.20 | 0.45 | 0.10 | 1.05 | 1.14 | 0.39 | Basic-leucine zipper (bZIP) transcription factor family protein | |
C2H2 | Vigun05g249900 | 6 × 10−164 | 91.67 | Vun007540 | 0.09 | −0.01 | 0.52 | 0.56 | 1.08 | 0.23 | C2H2-like zinc finger protein | |
C2H2 | Vigun07g117400 | 3 × 10−111 | 55.04 | Vun000818 | −0.12 | −0.26 | −0.36 | −0.44 | −0.87 | −1.23 | Indeterminate (ID)-domain 2 | |
C3H | Vigun04g004600 | 2 × 10−61 | 66.93 | Vun007793 | −0.50 | −1.16 | −1.14 | −0.19 | −1.23 | −0.92 | CCCH-type zinc finger family protein | |
CO-like | Vigun03g017700 | 2 × 10−11 | 66.67 | Vun007845 | 0.19 | 0.32 | 0.69 | 0.19 | 1.61 | 0.24 | B-box type zinc finger protein with CCT domain | |
DBB | Vigun03g017700 | 4 × 10−11 | 56 | Vun005093 | 0.19 | 0.32 | 0.69 | 0.19 | 1.61 | 0.24 | B-box type zinc finger protein with CCT domain | |
Dof | Vigun03g336800 | 9 × 10−27 | 64.71 | Vun009020 | −0.18 | −0.66 | −0.58 | −0.38 | −0.67 | −1.00 | cycling DOF factor 3 | |
Dof | Vigun05g041000 | 2 × 10−26 | 70.69 | Vun010069 | −0.09 | −0.68 | −1.02 | −0.90 | −1.10 | −1.07 | cycling DOF factor 2 | |
ERF | Vigun06g125400 | 3 × 10−28 | 68.92 | Vun008975 | −0.65 | −0.88 | −1.02 | −0.32 | −1.00 | −1.36 | Integrase-type DNA-binding superfamily protein | |
ERF | Vigun09g066100 | 2 × 10−22 | 60 | Vun004651 | −0.19 | −0.29 | −0.96 | −0.24 | −1.43 | −1.40 | Integrase-type DNA-binding superfamily protein | |
ERF | Vigun10g147000 | 5 × 10−27 | 66.22 | Vun004557 | −0.13 | −0.40 | −0.58 | −0.39 | −0.50 | −1.27 | Integrase-type DNA-binding superfamily protein | |
G2-like | Vigun05g236200 | 1 × 10−68 | 58.91 | Vun009285 | −0.10 | 0.12 | 0.79 | 0.63 | 1.30 | 0.59 | Homeodomain-like superfamily protein | |
GRF | Vigun01g171000 | 7 × 10−132 | 99.46 | Vun004052 | 0.03 | 0.10 | −0.44 | −0.26 | −1.24 | −0.62 | growth-regulating factor 4 | |
HSF | Vigun01g137100 | 1 × 10−38 | 63.83 | Vun002051 | −0.04 | 0.14 | 0.70 | 1.01 | 1.32 | 2.36 | heat shock transcription factor A6B | |
HSF | Vigun09g224500 | 6 × 10−36 | 60.64 | Vun002051 | −0.26 | −0.05 | 1.24 | 2.28 | 2.38 | 4.01 | heat shock transcription factor A2 | |
LBD | Vigun02g150500 | 1 × 10−125 | 99.45 | Vun010679 | 0.61 | 0.75 | 1.11 | 0.19 | 0.88 | 0.24 | LOB domain-containing protein 37 | |
LBD | Vigun03g285600 | 9 × 10−168 | 99.56 | Vun009383 | 0.39 | 0.72 | 1.11 | −0.11 | 1.09 | −0.09 | LOB domain-containing protein 39 | |
MIKC_MADS | Vigun02g125600 | 6 × 10−19 | 50.68 | Vun005031 | −0.19 | −0.82 | −1.06 | 0.01 | −0.89 | −1.09 | K-box region and MADS-box transcription factor family protein | |
MIKC_MADS | Vigun03g126100 | 1 × 10−104 | 97.44 | Vun010515 | −0.47 | −0.58 | −1.04 | 0.11 | −0.64 | −0.45 | K-box region and MADS-box transcription factor family protein | |
M-type_MADS | Vigun02g125600 | 1 × 10−19 | 54.93 | Vun006638 | −0.19 | −0.82 | −1.06 | 0.01 | −0.89 | −1.09 | K-box region and MADS-box transcription factor family protein | |
M-type_MADS | Vigun03g126100 | 3 × 10−46 | 59.02 | Vun006638 | −0.47 | −0.58 | −1.04 | 0.11 | −0.64 | −0.45 | K-box region and MADS-box transcription factor family protein | |
MYB | Vigun02g147400 | 0 | 100 | Vun007952 | 0.25 | 0.58 | 0.43 | 0.62 | 1.21 | −0.24 | myb domain protein 73 | |
MYB | Vigun03g281700 | 0 | 100 | Vun007814 | 0.16 | 0.39 | 0.30 | 0.87 | 1.08 | 0.10 | myb domain protein 73 | |
MYB_related | Vigun02g147400 | 6 × 10−20 | 51.47 | Vun001892 | 0.25 | 0.58 | 0.43 | 0.62 | 1.21 | −0.24 | myb domain protein 73 | |
MYB_related | Vigun03g281700 | 2 × 10−21 | 50 | Vun001892 | 0.16 | 0.39 | 0.30 | 0.87 | 1.08 | 0.10 | myb domain protein 73 | |
MYB_related | Vigun06g096400 | 4 × 10−74 | 60.14 | Vun002263 | −0.31 | −0.91 | −0.93 | −0.67 | −1.02 | −0.90 | Homeodomain-like superfamily protein | |
MYB_related | Vigun07g078900 | 1 × 10−173 | 100 | Vun008084 | −0.10 | −0.32 | −0.29 | −0.53 | −0.37 | −1.04 | Homeodomain-like superfamily protein | |
MYB_related | Vigun08g140800 | 2 × 10−175 | 97.15 | Vun002263 | −0.21 | −0.83 | −0.65 | −0.63 | −0.80 | −1.26 | Homeodomain-like superfamily protein | |
NAC | Vigun10g154100 | 5 × 10−54 | 63.49 | Vun011756 | −0.04 | 0.52 | 0.52 | 1.53 | 0.99 | 1.82 | ||
NAC | Vigun10g154300 | 8 × 10−52 | 63.49 | Vun011756 | 0.10 | 0.49 | 0.83 | 1.46 | 1.11 | 1.82 | NAC transcription factor-like 9 | |
NAC | Vigun10g154700 | 8 × 10−47 | 59.2 | Vun011756 | 0.14 | 0.51 | 0.86 | 1.48 | 1.16 | 1.86 | NAC transcription factor-like 9 | |
NAC | VigunL060400 | 7 × 10−55 | 62.4 | Vun011756 | −0.04 | 0.46 | 0.60 | 1.44 | 0.94 | 1.72 | NAC transcription factor-like 9 | |
NAC | VigunL060000 | 5 × 10−52 | 63.49 | Vun011756 | 0.11 | 0.50 | 0.83 | 1.47 | 1.12 | 1.82 | NAC transcription factor-like 9 | |
TALE | Vigun08g034600 | 6 × 10−41 | 81.37 | Vun011787 | 4.38 | 3.90 | 3.40 | −0.41 | 1.81 | 2.63 | KNOTTED-like from Arabidopsis thaliana | |
Trihelix | Vigun04g131800 | 4 × 10−102 | 91.11 | Vun009396 | 0.40 | 0.09 | 0.27 | 0.67 | 1.19 | 0.54 | Duplicated homeodomain-like superfamily protein | |
WOX | Vigun03g004000 | 5 × 10−27 | 72.31 | Vun003771 | −0.37 | −0.48 | −0.46 | −0.55 | −0.90 | −1.04 | WUSCHEL related homeobox 1 | |
WRKY | Vigun05g118000 | 4 × 10−23 | 64.91 | Vun007741 | 0.23 | 0.32 | 0.77 | −0.02 | 1.07 | 0.64 | WRKY DNA-binding protein 49 | |
WRKY | Vigun06g122600 | 0 | 100 | Vun001400 | 0.36 | 0.20 | 0.36 | 1.15 | 0.78 | 0.75 | WRKY DNA-binding protein 30 | |
WRKY | Vigun08g112200 | 4 × 10−27 | 64.79 | Vun005168 | 0.25 | −0.04 | 0.53 | 1.46 | 1.35 | 0.67 | WRKY DNA-binding protein 70 |
* Arabi-defline: Arabidopsis thaliana gene’s description. The box color indicates the gene expression level from green (down-regulated) to white to red (up-regulated). The black line of box mean significant difference.