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. 2021 Mar 17;10(3):567. doi: 10.3390/plants10030567

Table 4.

The differently expressed genes (DEGs) list related to plant hormone, TF of cowpeas exposed to different dose rates of gamma-rays and proton-beams.

Category Gene ID E-Value Identity ID Log2 Fold Change Arabi-Defline *
G 100 Gy G 200 Gy G 300 Gy P 100 Gy P 200 Gy P 300 Gy
Plant hormone JA Vigun05g272300 0 56.17 AT1G55020 1.44 2.01 0.79 0.53 0.70 2.01 lipoxygenase 1
JA Vigun09g243000 0 64.68 AT5G42650 0.08 0.36 0.18 0.52 0.32 1.06 allene oxide synthase
JA Vigun10g168900 0 57.01 AT1G55020 0.57 0.83 0.05 0.00 −0.25 1.27 lipoxygenase 1
JA Vigun11g024700 5 × 10−131 51.83 AT2G06050 0.47 0.46 0.24 0.99 0.27 1.05 12-oxophytodienoate reductase 2
JA Vigun11g025000 5 × 10−127 50.52 AT2G06050 0.42 0.47 0.33 1.00 0.26 1.12 12-oxophytodienoate reductase 2
JA Vigun09g060800 2 × 10−14 53.06 AT4G28910 −0.15 −0.34 −0.45 −0.83 −0.87 −1.04 ABI five binding protein 3
SA Vigun01g111100 3 × 10−126 54.47 AT3G57260 1.01 1.49 0.98 0.22 0.56 1.47 beta-1,3-glucanase 1
SA Vigun01g111300 1 × 10−101 56.49 AT3G57260 1.24 1.70 1.29 0.31 0.61 1.57 beta-1,3-glucanase 1
SA Vigun06g125400 1 × 10−16 55.56 AT4G17500 −0.65 −0.88 −1.02 −0.32 −1.00 −1.36 Integrase-type DNA-binding superfamily protein
SA Vigun09g066100 9 × 10−12 53.42 AT4G17500 −0.19 −0.29 −0.96 −0.24 −1.43 −1.40 Integrase-type DNA-binding superfamily protein
SA Vigun10g147000 1 × 10−16 51.47 AT4G17500 −0.13 −0.40 −0.58 −0.39 −0.50 −1.27 Integrase-type DNA-binding superfamily protein
SA Vigun11g037800 1 × 10−102 52.38 AT3G57260 −0.30 −0.70 −0.45 −0.34 −0.57 −1.34 Glycosyl hydrolase superfamily protein
SA Vigun05g118000 5 × 10−21 59.65 AT3G01080 0.23 0.32 0.77 −0.02 1.07 0.64 WRKY DNA-binding protein 49
SA Vigun06g122600 2 × 10−14 51.72 AT3G01080 0.36 0.20 0.36 1.15 0.78 0.75 WRKY DNA-binding protein 30
SA Vigun08g112200 1 × 10−22 55.07 AT2G40750 0.25 −0.04 0.53 1.46 1.35 0.67 WRKY DNA-binding protein 70
SA Vigun03g272400 3 × 10−100 55.98 AT2G23620 −0.26 −0.52 −0.96 −0.27 −1.11 −1.08 methyl esterase 1
ETH Vigun03g006800 8 × 10−152 73.4 AT1G05010 0.11 0.43 0.29 0.37 0.66 1.20 ethylene-forming enzyme
ETH Vigun06g125400 1 × 10−18 54.29 AT2G44840 −0.65 −0.88 −1.02 −0.32 −1.00 −1.36 Integrase-type DNA-binding superfamily protein
ETH Vigun10g147000 9 × 10−20 52 AT2G44840 −0.13 −0.40 −0.58 −0.39 −0.50 −1.27 Integrase-type DNA-binding superfamily protein
AUX Vigun02g197800 4 × 10−161 60.91 AT4G27070 0.50 0.57 0.18 0.53 −0.18 1.19 Pyridoxal-5\'-phosphate-dependent enzyme family protein
AUX Vigun02g197900 2 × 10−166 60.14 AT5G54810 0.45 0.66 0.05 0.52 −0.20 1.19 Pyridoxal-5\'-phosphate-dependent enzyme family protein
AUX Vigun02g200300 5 × 10−167 62.79 AT5G54810 0.45 0.68 0.04 0.53 −0.18 1.21 Pyridoxal-5\'-phosphate-dependent enzyme family protein
AUX Vigun08g204500 0 75.13 AT5G55250 −0.31 −0.25 −0.77 −0.19 −1.08 −0.47 IAA carboxylmethyltransferase 1
AUX Vigun01g186200 1 × 10−121 51.34 AT5G62000 −0.08 −0.11 −0.39 −0.45 −1.19 −0.77 auxin response factor 2
AUX Vigun09g055300 3 × 10−89 62.02 AT5G57090 −0.35 −0.86 −0.83 −0.58 −1.29 −1.67 Auxin efflux carrier family protein
CK Vigun01g223000 4 × 10−141 50.44 AT5G05870 0.30 0.74 0.67 1.27 1.16 1.17 UDP-Glycosyltransferase superfamily protein
CK Vigun09g248900 0 68.08 AT1G75450 0.07 0.19 0.42 1.41 1.15 0.49 cytokinin oxidase 5
CK Vigun05g236200 1 × 10−15 54.55 AT3G16857 −0.10 0.12 0.79 0.63 1.30 0.59 Homeodomain-like superfamily protein
BR Vigun04g063600 0 74 AT3G30180 −0.13 −0.33 −0.98 −0.98 −1.36 −0.84 brassinosteroid-6-oxidase 2
BR Vigun10g199600 0 58.4 AT2G07050 −0.04 −0.39 0.58 0.46 1.20 0.06 Terpenoid cyclases family protein
ABA Vigun01g111100 4 × 10−126 54.47 AT3G57260 1.01 1.49 0.98 0.22 0.56 1.47 beta-1,3-glucanase 1
ABA Vigun01g111300 1 × 10−101 56.49 AT3G57260 1.24 1.70 1.29 0.31 0.61 1.57 beta-1,3-glucanase 1
ABA Vigun02g108000 0 60.09 AT2G29090 0.32 0.42 −0.19 1.36 1.52 −0.19 cytochrome P450, family 707, subfamily A, polypeptide 1
ABA Vigun11g037800 1 × 10−102 52.38 AT3G57260 −0.30 −0.70 −0.45 −0.34 −0.57 −1.34 Glycosyl hydrolase superfamily protein
ABA Vigun11g124400 1 × 10−63 54.36 AT1G52340 2.33 2.85 1.92 −0.30 1.23 2.07 NAD(P)-binding Rossmann-fold superfamily protein
ABA Vigun05g118000 2 × 10−19 56.14 AT1G80840 0.23 0.32 0.77 −0.02 1.07 0.64 WRKY DNA-binding protein 49
ABA Vigun06g125400 3 × 10−14 67.86 AT2G40220 −0.65 −0.88 −1.02 −0.32 −1.00 −1.36 Integrase-type DNA-binding superfamily protein
ABA Vigun08g103000 5 × 10−164 71.24 AT3G50500 −0.24 −0.62 −0.36 −0.13 −0.59 −1.03 Protein kinase superfamily protein
ABA Vigun09g066100 1 × 10−10 59.65 AT2G40220 −0.19 −0.29 −0.96 −0.24 −1.43 −1.40 Integrase-type DNA-binding superfamily protein
ABA Vigun10g147000 1 × 10−14 64.29 AT2G40220 −0.13 −0.40 −0.58 −0.39 −0.50 −1.27 Integrase-type DNA-binding superfamily protein
ABA Vigun01g182800 0 66.91 AT5G06530 −0.13 −0.11 0.52 0.73 1.42 0.86 ABC-2 type transporter family protein
ABA Vigun07g020000 0 78.09 AT5G06530 0.07 0.42 0.80 −0.45 1.19 0.45 ABC-2 type transporter family protein
ABA Vigun07g208100 0 61.09 AT1G71960 −0.49 −1.16 −0.86 −0.53 −0.99 −0.53 ATP-binding cassette family G25
GA Vigun01g203100 2 × 10−30 54.39 AT1G09530 −0.20 −0.80 −1.10 0.19 −0.92 −0.80 phytochrome interacting factor 3
GA Vigun11g176000 1 × 10−16 50 AT1G09530 0.03 0.37 0.59 0.67 1.16 0.38 cryptochrome-interacting basic-helix-loop-helix 1
TF ARR-B Vigun05g236200 2 × 10−15 54.24 Vun001281 −0.10 0.12 0.79 0.63 1.30 0.59 Homeodomain-like superfamily protein
B3 Vigun01g186200 5 × 10−85 65.37 Vun008946 −0.08 −0.11 −0.39 −0.45 −1.19 −0.77 auxin response factor 2
bHLH Vigun01g203100 3 × 10−22 67.21 Vun004469 −0.20 −0.80 −1.10 0.19 −0.92 −0.80 phytochrome interacting factor 3
bHLH Vigun02g030100 1 × 10−136 100 Vun010029 −0.07 −0.03 0.69 0.45 1.28 0.39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
bHLH Vigun11g176000 0 99.73 Vun001364 0.03 0.37 0.59 0.67 1.16 0.38 cryptochrome-interacting basic-helix-loop-helix 1
bZIP Vigun05g188500 3 × 10−22 51.55 Vun006014 0.60 0.64 0.77 0.99 1.17 0.15 Basic-leucine zipper (bZIP) transcription factor family protein
bZIP Vigun05g211100 1 × 10−22 52.58 Vun006014 0.20 0.45 0.10 1.05 1.14 0.39 Basic-leucine zipper (bZIP) transcription factor family protein
C2H2 Vigun05g249900 6 × 10−164 91.67 Vun007540 0.09 −0.01 0.52 0.56 1.08 0.23 C2H2-like zinc finger protein
C2H2 Vigun07g117400 3 × 10−111 55.04 Vun000818 −0.12 −0.26 −0.36 −0.44 −0.87 −1.23 Indeterminate (ID)-domain 2
C3H Vigun04g004600 2 × 10−61 66.93 Vun007793 −0.50 −1.16 −1.14 −0.19 −1.23 −0.92 CCCH-type zinc finger family protein
CO-like Vigun03g017700 2 × 10−11 66.67 Vun007845 0.19 0.32 0.69 0.19 1.61 0.24 B-box type zinc finger protein with CCT domain
DBB Vigun03g017700 4 × 10−11 56 Vun005093 0.19 0.32 0.69 0.19 1.61 0.24 B-box type zinc finger protein with CCT domain
Dof Vigun03g336800 9 × 10−27 64.71 Vun009020 −0.18 −0.66 −0.58 −0.38 −0.67 −1.00 cycling DOF factor 3
Dof Vigun05g041000 2 × 10−26 70.69 Vun010069 −0.09 −0.68 −1.02 −0.90 −1.10 −1.07 cycling DOF factor 2
ERF Vigun06g125400 3 × 10−28 68.92 Vun008975 −0.65 −0.88 −1.02 −0.32 −1.00 −1.36 Integrase-type DNA-binding superfamily protein
ERF Vigun09g066100 2 × 10−22 60 Vun004651 −0.19 −0.29 −0.96 −0.24 −1.43 −1.40 Integrase-type DNA-binding superfamily protein
ERF Vigun10g147000 5 × 10−27 66.22 Vun004557 −0.13 −0.40 −0.58 −0.39 −0.50 −1.27 Integrase-type DNA-binding superfamily protein
G2-like Vigun05g236200 1 × 10−68 58.91 Vun009285 −0.10 0.12 0.79 0.63 1.30 0.59 Homeodomain-like superfamily protein
GRF Vigun01g171000 7 × 10−132 99.46 Vun004052 0.03 0.10 −0.44 −0.26 −1.24 −0.62 growth-regulating factor 4
HSF Vigun01g137100 1 × 10−38 63.83 Vun002051 −0.04 0.14 0.70 1.01 1.32 2.36 heat shock transcription factor A6B
HSF Vigun09g224500 6 × 10−36 60.64 Vun002051 −0.26 −0.05 1.24 2.28 2.38 4.01 heat shock transcription factor A2
LBD Vigun02g150500 1 × 10−125 99.45 Vun010679 0.61 0.75 1.11 0.19 0.88 0.24 LOB domain-containing protein 37
LBD Vigun03g285600 9 × 10−168 99.56 Vun009383 0.39 0.72 1.11 −0.11 1.09 −0.09 LOB domain-containing protein 39
MIKC_MADS Vigun02g125600 6 × 10−19 50.68 Vun005031 −0.19 −0.82 −1.06 0.01 −0.89 −1.09 K-box region and MADS-box transcription factor family protein
MIKC_MADS Vigun03g126100 1 × 10−104 97.44 Vun010515 −0.47 −0.58 −1.04 0.11 −0.64 −0.45 K-box region and MADS-box transcription factor family protein
M-type_MADS Vigun02g125600 1 × 10−19 54.93 Vun006638 −0.19 −0.82 −1.06 0.01 −0.89 −1.09 K-box region and MADS-box transcription factor family protein
M-type_MADS Vigun03g126100 3 × 10−46 59.02 Vun006638 −0.47 −0.58 −1.04 0.11 −0.64 −0.45 K-box region and MADS-box transcription factor family protein
MYB Vigun02g147400 0 100 Vun007952 0.25 0.58 0.43 0.62 1.21 −0.24 myb domain protein 73
MYB Vigun03g281700 0 100 Vun007814 0.16 0.39 0.30 0.87 1.08 0.10 myb domain protein 73
MYB_related Vigun02g147400 6 × 10−20 51.47 Vun001892 0.25 0.58 0.43 0.62 1.21 −0.24 myb domain protein 73
MYB_related Vigun03g281700 2 × 10−21 50 Vun001892 0.16 0.39 0.30 0.87 1.08 0.10 myb domain protein 73
MYB_related Vigun06g096400 4 × 10−74 60.14 Vun002263 −0.31 −0.91 −0.93 −0.67 −1.02 −0.90 Homeodomain-like superfamily protein
MYB_related Vigun07g078900 1 × 10−173 100 Vun008084 −0.10 −0.32 −0.29 −0.53 −0.37 −1.04 Homeodomain-like superfamily protein
MYB_related Vigun08g140800 2 × 10−175 97.15 Vun002263 −0.21 −0.83 −0.65 −0.63 −0.80 −1.26 Homeodomain-like superfamily protein
NAC Vigun10g154100 5 × 10−54 63.49 Vun011756 −0.04 0.52 0.52 1.53 0.99 1.82
NAC Vigun10g154300 8 × 10−52 63.49 Vun011756 0.10 0.49 0.83 1.46 1.11 1.82 NAC transcription factor-like 9
NAC Vigun10g154700 8 × 10−47 59.2 Vun011756 0.14 0.51 0.86 1.48 1.16 1.86 NAC transcription factor-like 9
NAC VigunL060400 7 × 10−55 62.4 Vun011756 −0.04 0.46 0.60 1.44 0.94 1.72 NAC transcription factor-like 9
NAC VigunL060000 5 × 10−52 63.49 Vun011756 0.11 0.50 0.83 1.47 1.12 1.82 NAC transcription factor-like 9
TALE Vigun08g034600 6 × 10−41 81.37 Vun011787 4.38 3.90 3.40 −0.41 1.81 2.63 KNOTTED-like from Arabidopsis thaliana
Trihelix Vigun04g131800 4 × 10−102 91.11 Vun009396 0.40 0.09 0.27 0.67 1.19 0.54 Duplicated homeodomain-like superfamily protein
WOX Vigun03g004000 5 × 10−27 72.31 Vun003771 −0.37 −0.48 −0.46 −0.55 −0.90 −1.04 WUSCHEL related homeobox 1
WRKY Vigun05g118000 4 × 10−23 64.91 Vun007741 0.23 0.32 0.77 −0.02 1.07 0.64 WRKY DNA-binding protein 49
WRKY Vigun06g122600 0 100 Vun001400 0.36 0.20 0.36 1.15 0.78 0.75 WRKY DNA-binding protein 30
WRKY Vigun08g112200 4 × 10−27 64.79 Vun005168 0.25 −0.04 0.53 1.46 1.35 0.67 WRKY DNA-binding protein 70

* Arabi-defline: Arabidopsis thaliana gene’s description. The box color indicates the gene expression level from green (down-regulated) to white to red (up-regulated). The black line of box mean significant difference.