Table 1.
Summary of miRNA sequencing of the 18 samples. V2d, V6d, and V8d represent megalocytivirus-infected fish at 2, 6, or 8 days post infection (dpi), respectively. C2d, C6d, and C8d represent control fish at 2, 6, or 8 dpi, respectively. For both virus-infected and control fish, at each time point, three fish were used (indicated by the number of 1, 2, or 3, e.g., V2d-1, V2d-2, and V2d-3).
| Sample Name | Clean Tags (%) | Known miRNA | Novel miRNA |
|---|---|---|---|
| V2d-1 | 11,837,245 (96.83%) | 365 | 259 |
| V2d-2 | 11,280,092 (96.22%) | 374 | 239 |
| V2d-3 | 9,924,270 (96.10%) | 382 | 247 |
| V6d-1 | 17,710,805 (96.20%) | 518 | 296 |
| V6d-2 | 10,365,825 (96.37%) | 425 | 239 |
| V6d-3 | 11,893,288 (96.59%) | 451 | 272 |
| V8d-1 | 12,212,869 (96.67%) | 489 | 286 |
| V8d-2 | 13,140,335 (95.92%) | 365 | 288 |
| V8d-3 | 13,010,734 (95.98%) | 476 | 293 |
| C2d-1 | 12,573,839 (96.38%) | 432 | 248 |
| C2d-2 | 8,926,038 (94.98%) | 364 | 233 |
| C2d-3 | 8,576,422 (94.70%) | 368 | 225 |
| C6d-1 | 11,653,795 (96.21%) | 413 | 235 |
| C6d-2 | 14,097,705 (97.33%) | 367 | 260 |
| C6d-3 | 12,708,286 (95.14%) | 396 | 261 |
| C8d-1 | 10,633,416 (95.26%) | 351 | 260 |
| C8d-2 | 11,449,436 (95.92%) | 357 | 218 |
| C8d-3 | 11,412,190 (94.55%) | 394 | 228 |