Table 1.
Mean of DNA methylation values (and standard deviation) of CpG sites located within the analysed genes in HMCLs (MM1s, KMS11) and normal control cells (PBMCs). HMCLs, human myeloma cell lines; FDR: False Discovery Rate.
| MM1s | KMS11 | Normal Control Cells | MM1s vs. Normal Control Cells | KMS11 vs. Normal Control Cells | |||
|---|---|---|---|---|---|---|---|
| Gene | p-Value | FDR | p-Value | FDR | |||
| COX10 | 0.353 (0.003) | 0.331 (0.009) | 0.528 (0.014) | 3.57 × 10−6 | 1.67 × 10−5 | 2.91 × 10−6 | 1.36 × 10−5 |
| COX18 | 0.054 (0.003) | 0.058 (0.006) | 0.068 (0.007) | 0.134 | 0.250 | 0.406 | 0.421 |
| DNM1L | 0.071 (0.002) | 0.056 (0.002) | 0.065 (0.003) | 0.796 | 0.872 | 0.101 | 0.129 |
| FIS1 | 0.091 (0.014) | 0.104 (0.007) | 0.082 (0.009) | 0.766 | 0.872 | 0.188 | 0.229 |
| KIF5B | 0.043 (0.006) | 0.056 (0.003) | 0.044 (0.003) | 0.473 | 0.698 | 0.055 | 0.077 |
| MAP1LC3A | 0.760 (0.007) | 0.836 (0.005) | 0.262 (0.009) | 8.45 × 10−16 | 7.89 × 10−15 | 6.67 × 10−14 | 9.34 × 10−13 |
| MARCH5 | 0.068 (0.003) | 0.081 (0.006) | 0.057 (0.002) | 0.052 | 0.120 | 8.09 × 10−4 | 0.002 |
| MFN1 | 0.090 (0.014) | 0.105 (0.009) | 0.052 (0.003) | 0.003 | 0.008 | 2.22 × 10−5 | 7.76 × 10−5 |
| MFN2 | 0.064 (0.004) | 0.075 (0.007) | 0.057 (0.004) | 0.177 | 0.292 | 0.029 | 0.046 |
| MTERF | 0.058 (0.009) | 0.159 (0.008) | 0.043 (0.005) | 0.939 | 0.939 | 1.24 × 10−8 | 6.93 × 10−8 |
| MTERFD1 | 0.091 (0.004) | 0.086 (0.009) | 0.056 (0.003) | 1.29 × 10−6 | 7.24 × 10−6 | 0.001 | 0.002 |
| MTIF2 | 0.053 (0.01) | 0.057 (0.004) | 0.039 (0.009) | 0.143 | 0.250 | 0.213 | 0.249 |
| MTIF3 | 0.064 (0.008) | 0.074 (0.008) | 0.049 (0.002) | 0.029 | 0.075 | 0.002 | 0.003 |
| POLG1 | 0.492 (0.014) | 0.525 (0.003) | 0.510 (0.008) | 0.133 | 0.250 | 0.235 | 0.254 |
| POLG2 | 0.060 (0.002) | 0.070 (0.009) | 0.036 (0.003) | 4.14 × 10−5 | 1.45 × 10−4 | 9.26 × 10−4 | 0.002 |
| POLRMT | 0.066 (0.002) | 0.060 (0.005) | 0.027 (0.005) | 9.73 × 10−6 | 3.89 × 10−5 | 0.003 | 0.005 |
| RAB32 | 0.358 (0.003) | 0.596 (0.015) | 0.079 (0.006) | 3.15 × 10−19 | 8.8 × 10−18 | 5.21 × 10−14 | 9.34 × 10−13 |
| RHOT1 | 0.042 (0.003) | 0.048 (0.007) | 0.037 (0.002) | 0.809 | 0.872 | 0.082 | 0.109 |
| TFAM | 0.065 (0.004) | 0.076 (0.003) | 0.047 (0.003) | 0.894 | 0.927 | 1.37x10−4 | 4.27 × 10−4 |
| TFB1M | 0.103 (0.002) | 0.168 (0.008) | 0.088 (0.006) | 0.653 | 0.831 | 1.29x10−5 | 5.15 × 10−0.5 |
| TFB2M | 0.090 (0.010) | 0.077 (0.009) | 0.074 (0.009) | 0.556 | 0.779 | 0.850 | 0.850 |