Table A11.
Details on the strain-specific short-read archive (SRA) accession numbers.
| Sample ID | Percentage of Good Targets (SeqSphere+) | Average Coverage (Assembled) (SeqSphere+) | Approximated Genome Size (Megabases) (SeqSphere+) | Species (Kraken2) | Sequence Type | Complex Type (SeqSphere+) | SRA Accession |
|---|---|---|---|---|---|---|---|
| Iso00017 | 99.4 | 105 | 6.7 | Pseudomonas aeruginosa | 381 | 1791 | SRR13617317 |
| Iso00022 | 99.4 | 102 | 6.9 | Pseudomonas aeruginosa | 2483 | 1792 | SRR13617316 |
| Iso00032 | 99.2 | 106 | 6.6 | Pseudomonas aeruginosa | 3587 | 1793 | SRR13617305 |
| Iso00041 | 99.4 | 97 | 5.0 | Escherichia coli | 2 (Pasteur) | 11349 | SRR13617294 |
| Iso00044 | 99.7 | 116 | 5.1 | Klebsiella pneumoniae | 327 | 5462 | SRR13617283 |
| Iso00049 | 98.7 | 94 | 5.2 | Escherichia coli | 3 (Pasteur) | 11350 | SRR13617272 |
| Iso00060 | 99.6 | 112 | 5.3 | Klebsiella pneumoniae | 5379 | 5463 | SRR13617261 |
| Iso00068 | 99.6 | 109 | 4.9 | Escherichia coli | 632 (Pasteur) | 11351 | SRR13617250 |
| Iso00069 | 99.6 | 104 | 6.8 | Pseudomonas aeruginosa | 360 | 1794 | SRR13617239 |
| Iso00073 | 99.4 | 104 | 5.8 | Klebsiella pneumoniae | 39 | 5464 | SRR13617236 |
| Iso00081 | 98.7 | 108 | 6.6 | Pseudomonas aeruginosa | 244 | 1795 | SRR13617315 |
| Iso00082 | 99.4 | 112 | 6.3 | Pseudomonas aeruginosa | 514 | 1796 | SRR13617314 |
| Iso00088 | 97.8 | 105 | 6.8 | Pseudomonas aeruginosa | 1682 | 1797 | SRR13617313 |
| Iso00099 | 99.4 | 106 | 6.6 | Pseudomonas aeruginosa | 244 | 1798 | SRR13617312 |
| Iso00100 | 99.2 | 108 | 5.5 | Klebsiella pneumoniae | 152 | 5465 | SRR13617311 |
| Iso00102 | 99.2 | 111 | 5.4 | Klebsiella pneumoniae | 514 | 5466 | SRR13617310 |
| Iso00106 | 99.5 | 110 | 6.4 | Pseudomonas aeruginosa | 1521 | 1799 | SRR13617309 |
| Iso00114 | 99.4 | 105 | 6.7 | Pseudomonas aeruginosa | 244 | 1800 | SRR13617308 |
| Iso00117 | 99.2 | 95 | 5.3 | Escherichia coli | 4 (Pasteur) | 11352 | SRR13617307 |
| Iso00124 | 99.4 | 112 | 5.3 | Klebsiella pneumoniae | 399 | 5467 | SRR13617306 |
| Iso00137 | 99.4 | 110 | 6.4 | Pseudomonas aeruginosa | 3014 | 1801 | SRR13617304 |
| Iso00144 | 99.6 | 109 | 6.5 | Pseudomonas aeruginosa | 245 | 1802 | SRR13617303 |
| Iso00146 | 99.4 | 110 | 5.5 | Klebsiella pneumoniae | 4 | 5468 | SRR13617302 |
| Iso00147 | 99.5 | 108 | 6.6 | Pseudomonas aeruginosa | 245 | 1802 | SRR13617301 |
| Iso00149 | 99.6 | 104 | 6.9 | Pseudomonas aeruginosa | 381 | 1803 | SRR13617300 |
| Iso00152 | 99.4 | 98 | 5.2 | Escherichia coli | 22 (Pasteur) | 11353 | SRR13617299 |
| Iso00153 | 98.5 | 111 | 6.4 | Pseudomonas aeruginosa | 704 | ? | SRR13617298 |
| Iso00154 | 99.4 | 102 | 7.0 | Pseudomonas aeruginosa | 244 | 1805 | SRR13617297 |
| Iso00157 | 99.6 | 114 | 6.3 | Pseudomonas aeruginosa | 2616 | 1806 | SRR13617296 |
| Iso00160 | 99.2 | 115 | 6.2 | Pseudomonas aeruginosa | 170 | 1807 | SRR13617295 |
| Iso00162 | 99.1 | 111 | 6.5 | Pseudomonas aeruginosa | 274 | 1808 | SRR13617293 |
| Iso00176 | 99.0 | 98 | 5.1 | Escherichia coli | 132 (Pasteur) | 11354 | SRR13617292 |
| Iso00177 | 99.6 | 108 | 5.5 | Klebsiella pneumoniae | 17 | 5469 | SRR13617291 |
| Iso00180 | 99.8 | 110 | 6.5 | Pseudomonas aeruginosa | 856 | 1809 | SRR13617290 |
| Iso00181 | 99.9 | 107 | 5.6 | Klebsiella pneumoniae | 5380 | 5470 | SRR13617289 |
| Iso00183 | 99.5 | 107 | 6.7 | Pseudomonas aeruginosa | 244 | 1795 | SRR13617288 |
| Iso00184 | 98.3 | 104 | 5.6 | Klebsiella variicola subsp. variicola | 5381 | 5471 | SRR13617287 |
| Iso00186 | 98.7 | 113 | 6.3 | Pseudomonas aeruginosa | 3588 | 1810 | SRR13617286 |
| Iso00190 | 99.7 | 114 | 6.3 | Pseudomonas aeruginosa | 871 | 1811 | SRR13617285 |
| Iso00195 | 99.5 | 111 | 6.5 | Pseudomonas aeruginosa | 988 | 1812 | SRR13617284 |
| Iso00196 | 99.5 | 101 | 7.1 | Pseudomonas aeruginosa | 2475 | 1813 | SRR13617282 |
| Iso00198 | 99.6 | 112 | 6.4 | Pseudomonas aeruginosa | 2476 | 1814 | SRR13617281 |
| Iso00199 | 99.4 | 108 | 5.6 | Klebsiella pneumoniae | 17 | 5472 | SRR13617280 |
| Iso00204 | 99.5 | 104 | 6.9 | Pseudomonas aeruginosa | 639 | 1815 | SRR13617279 |
| Iso00208 | 99.7 | 109 | 6.5 | Pseudomonas aeruginosa | 132 | 1816 | SRR13617278 |
| Iso00214 | 99.7 | 108 | 5.5 | Klebsiella pneumoniae | 6 | 5473 | SRR13617277 |
| Iso00217 | 99.8 | 104 | 5.7 | Klebsiella pneumoniae | 3154 | 5474 | SRR13617276 |
| Iso00218 | 99.7 | 109 | 6.5 | Pseudomonas aeruginosa | 856 | 1809 | SRR13617275 |
| Iso00220 | 97.8 | 110 | 5.4 | Klebsiella quasipneumoniae subsp. similipneumoniae | 5382 | 5475 | SRR13617274 |
| Iso00221 | 99.0 | 94 | 5.1 | Escherichia coli | 132 (Pasteur) | 11354 | SRR13617273 |
| Iso00222 | 99.0 | 96 | 5.1 | Escherichia coli | 132 (Pasteur) | 11354 | SRR13617271 |
| Iso00225 | 99.1 | 99 | 5.2 | Escherichia coli | 506 (Pasteur) | 11355 | SRR13617270 |
| Iso00229 | 99.6 | 109 | 6.5 | Pseudomonas aeruginosa | 270 | 1817 | SRR13617269 |
| Iso00233 | 97.8 | 114 | 6.1 | Pseudomonas aeruginosa | 3227 | 1818 | SRR13617268 |
| Iso00234 | 99.7 | 111 | 5.5 | Klebsiella pneumoniae | 109 | 5476 | SRR13617267 |
| Iso00236 | 99.7 | 112 | 6.4 | Pseudomonas aeruginosa | 266 | 1819 | SRR13617266 |
| Iso00238 | 98.7 | 108 | 6.6 | Pseudomonas aeruginosa | 3589 | 1820 | SRR13617265 |
| Iso00240 | 98.9 | 112 | 5.4 | Klebsiella pneumoniae | 5383 | 5477 | SRR13617264 |
| Iso00242 | 98.9 | 111 | 6.4 | Pseudomonas aeruginosa | 3590 | 1821 | SRR13617263 |
| Iso00243 | 98.9 | 111 | 6.4 | Pseudomonas aeruginosa | 3590 | 1821 | SRR13617262 |
| Iso00245 | 99.3 | 107 | 4.8 | Escherichia coli | 2 (Pasteur) | 11356 | SRR13617260 |
| Iso00248 | 97.2 | 108 | 5.5 | Klebsiella quasivariicola | 5384 | 5478 | SRR13617259 |
| Iso00252 | 99.6 | 112 | 5.3 | Klebsiella pneumoniae | 607 | 5479 | SRR13617258 |
| Iso00267 | 99.6 | 103 | 5.7 | Klebsiella pneumoniae | 36 | 5480 | SRR13617257 |
| Iso00270 | 99.2 | 100 | 4.9 | Escherichia coli | 2 (Pasteur) | 11358 | SRR13617256 |
| Iso00272 | 99.5 | 109 | 6.5 | Pseudomonas aeruginosa | 2033 | 1822 | SRR13617255 |
| Iso00274 | 99.4 | 109 | 6.5 | Pseudomonas aeruginosa | 2033 | 1822 | SRR13617254 |
| Iso00277 | 99.4 | 109 | 5.5 | Klebsiella pneumoniae | 530 | 5481 | SRR13617253 |
| Iso00278 | 99.6 | 110 | 6.5 | Pseudomonas aeruginosa | 988 | 1823 | SRR13617252 |
| Iso00279 | 99.7 | 111 | 5.5 | Klebsiella pneumoniae | 5385 | 5482 | SRR13617251 |
| Iso00282 | 99.3 | 108 | 6.6 | Pseudomonas aeruginosa | 554 | 1824 | SRR13617249 |
| Iso00285 | 99.3 | 109 | 6.5 | Pseudomonas aeruginosa | 554 | 1824 | SRR13617248 |
| Iso00289 | 99.6 | 112 | 6.3 | Pseudomonas aeruginosa | 1485 | 1825 | SRR13617247 |
| Iso00290 | 99.7 | 113 | 6.3 | Pseudomonas aeruginosa | 1485 | 1825 | SRR13617246 |
| Iso00296 | 99.7 | 106 | 6.7 | Pseudomonas aeruginosa | 235 | 1826 | SRR13617245 |
| Iso00298 | 97.8 | 116 | 6.1 | Pseudomonas aeruginosa | 3227 | 1818 | SRR13617244 |
| Iso00299 | 99.3 | 108 | 4.6 | Escherichia coli | 1018 (Pasteur) | 11357 | SRR13617243 |
| Iso00301 | 98.6 | 112 | 6.3 | Pseudomonas aeruginosa | 3593 | 1827 | SRR13617242 |
| Iso00302 | 99.6 | 113 | 6.3 | Pseudomonas aeruginosa | 1755 | 1828 | SRR13617241 |
| Iso00309 | 98.6 | 109 | 6.5 | Pseudomonas aeruginosa | 3592 | 1829 | SRR13617240 |
| Iso00310 | 99.3 | 105 | 6.8 | Pseudomonas aeruginosa | 532 | 1830 | SRR13617238 |
| Iso00312 | 99.4 | 106 | 6.7 | Pseudomonas aeruginosa | 381 | 1791 | SRR13617237 |