Table 1.
Detected human papillomavirus (HPV types per sample.
| Sample | Smear | Reads | Mapped * | %Map ¶ | HPV Types + | Percent + |
|---|---|---|---|---|---|---|
| M-7440 | CC | 4,562,484 | 6474 | 0.1 | t45 | 100 |
| M-7443 | LSIL | 716,396 | 381,893 | 53.3 | 18, 74 | 99, 1 |
| M-7445 | LSIL | 15,287,436 | 8,496,237 | 55.6 | 68, NA440, NA448, t45 | 42, 36, 22, <1 |
| M-7447 | LSIL | 13,480,394 | 8,317,461 | 61.7 | 52, t52, 74, 87, 44, t45, t66 | 39, 38, 22, 1, <1, <1, <1 |
| M-7448 | ASCUS | 417,768 | 29,188 | 7.0 | 6, t45 | 98, 2 |
| M-7449 | Normal | 147,160 | 411 | 0.3 | t45 | 100 |
| M-7450 | ASCUS | 1,143,332 | 366,366 | 32.0 | 11, 52, t52, t56, 56, NA450 | 79, 8, 7, 2, 2, 1 |
| M-7452 | ASCUS | 17,740,624 | 11,991,175 | 67.6 | 59, 89, 53, t45 | 98, 1, 1, <1 |
| M-7454 | LSIL | 5,251,310 | 3,219,573 | 61.3 | 30, 51, 42, 11, t45 | 53, 38, 7, 2, <1 |
| M-7455 | NA | 6,350,088 | 2,897,763 | 45.6 | 16, 35, NA446, t45 | 85, 8, 7, <1 |
| M-7456 | HSIL | 3,879,422 | 8527 | 0.2 | t45, 16 | 86, 14 |
| M-7457 | LSIL | 367,094 | 13,371 | 3.6 | 6, t45, 51, 90 | 47, 44, 6, 3 |
| M-7458 | LSIL | 272,030 | 18,674 | 6.9 | 6, 86, t45 | 92, 5, 3 |
| M-7459 | HSIL | 28,572,654 | 21,901,105 | 76.7 | 31, t45 | 100, <1 |
| M-7460 | LSIL | 494,080 | 56,676 | 11.5 | 51, 70, t45, 34 | 74, 22, 2, 2 |
| M-7461 | LSIL | 365,174 | 2367 | 0.6 | 44, t45, 54, 53 | 49, 27, 13, 11 |
| M-7462 | LSIL | 884,470 | 238,060 | 26.9 | 51, 54 | 96, 4 |
| M-7463 | LSIL | 702,672 | 121,121 | 17.2 | 16, NA446, t45, 40 | 90, 8, 1, 1 |
| M-7464 | LSIL | 481,510 | 40,073 | 8.3 | 11, 31, 34, t45 | 61, 30, 5, 3 |
| M-7465 | NA | 9,826,324 | 6,183,616 | 62.9 | t66, NA451, 66, t45 | 49, 31, 19, <1 |
| M-7467 | Normal | 3,173,490 | 1,445,628 | 45.6 | 11, t45 | 100, <1 |
| M-7470 | LSIL | 13,217,166 | 7,266,920 | 55.0 | 53, 33, t33, 52, t52, NA436, t45 | 39, 16, 13, 11, 11, 10, <1 |
| M-7471 | Normal | 9,791,996 | 5,128,463 | 52.4 | 39, 82, t39, NA447, 73, 42, 66, NA449, 52, t52, t45 | 33, 27, 16, 10, 4, 3, 2, 2, 1, 1, <1 |
| M-7472 | LSIL | 6,241,940 | 3,953,761 | 63.3 | 51, t45 | 100, <1 |
* Reads matching 85% or more. ¶ %Map: Percentage of total reads that were mapped. + HPV types sorted by corresponding percentage of reads. Percent show the corresponding fraction of reads identified in each HPV type.