Table 3.
Detected integrations per sample and HPV type.
| Sample | % Integration | Integrations | After Marks * |
% Chr Y |
Types ¶ | Percents ¶ |
|---|---|---|---|---|---|---|
| M-7440 | 1.71% | 111 | 39 | 0.60% | t45 | 100 |
| M-7443 | 0.04% | 164 | 161 | 0.04% | 18 | 100 |
| M-7445 | 0.02% | 1508 | 1491 | 0.02% | 68, NA440, t45, NA448 | 96, 3.5, <1, <1 |
| M-7447 | 0.05% | 4554 | 4507 | 0.05% | 52, 74, t52, 87, 44, t45, t66 | 77, 19, 3, <1, <1, <1, <1 |
| M-7448 | 0.10% | 28 | 26 | 0.09% | 6 | 100 |
| M-7449 | 0.73% | 3 | 2 | 0.49% | t45 | 100 |
| M-7450 | 0.04% | 154 | 148 | 0.04% | 11, 52, 56, t52, NA450 | 70, 21, 7, <1, <1 |
| M-7452 | 0.07% | 8249 | 7803 | 0.07% | 59, 53, 89, t45 | 99, <1, <1, <1 |
| M-7454 | 0.07% | 2337 | 2292 | 0.07% | 30, 51, 42, 11, t45 | 54, 39, 6, 1, <1 |
| M-7455 | 0.06% | 1790 | 1769 | 0.06% | 16, 35, NA446, t45 | 91, 7, 2, <1 |
| M-7456 | 1.52% | 130 | 44 | 0.52% | t45 | 100 |
| M-7457 | 0.04% | 5 | 3 | 0.02% | 90, 51 | 67, 33 |
| M-7458 | 0.06% | 11 | 7 | 0.04% | 6, t45, 86 | 71, 14, 14 |
| M-7459 | 0.08% | 18,080 | 17,476 | 0.08% | 31, t45 | 100, <1 |
| M-7460 | 0.07% | 38 | 34 | 0.06% | 51, 70 | 74, 26 |
| M-7461 | 0.17% | 4 | 0 | 0.00% | - | - |
| M-7462 | 0.06% | 137 | 129 | 0.05% | 51, 54 | 98, 2 |
| M-7463 | 0.10% | 118 | 115 | 0.09% | 16, 40, NA446 | 92, 6, 2 |
| M-7464 | 0.05% | 20 | 18 | 0.04% | 11, 31 | 56, 34 |
| M-7465 | 0.04% | 2573 | 2539 | 0.04% | 66, NA451, t66, t45 | 53, 36, 11, <1 |
| M-7467 | 0.05% | 737 | 691 | 0.05% | 11, t45 | 99, <1 |
| M-7470 | 0.08% | 5952 | 5805 | 0.08% | 33, 53, 52, NA436, t52, t45, t33 | 39, 39, 20, 1, <1, <1, <1 |
| M-7471 | 0.03% | 1754 | 1695 | 0.03% | 39, 82, 73, 66, 42, 52, NA447, t39, t52, t45, NA449 | 67, 11, 10, 3, 3, 3, 1, <1, <1, <1, <1 |
| M-7472 | 0.12% | 4647 | 4418 | 0.11% | 51, t45 | 100, <1 |
¶ HPV types sorted by corresponding percentage of reads. Percent show the corresponding fraction of reads identified in each HPV type.