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An overview of graph mapping tools
| Tool | Graph Types | Sequencing Types | Other Notes |
|---|---|---|---|
| deBGA | De Bruijn graph | NGS | |
| BGREAT | Gapless alignment | ||
| BrownieAligner | |||
| GenomeMapper | Acyclic variation graph | NGS | No longer maintained |
| Graph Genome Aligner | |||
| HISAT2 | Fast | ||
| V-MAP | NGS and long read | ||
| VG | Variation graph | NGS and long read | Accurate, high memory usage |
| GraphAligner | Variation graph or overlap graph | Long read | Fast, high memory usage |
