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. 2021 Mar 29;6(4):512–523. doi: 10.1038/s41564-021-00870-7

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — a, Five-hundred-and-fifty-nine isolates incorporating a global collection²³. Blue shading indicates K. pneumoniae isolates from the BARNARDS collection. The branch labels are coloured according to country of origin. b, Detailed core genome characterization of 309 K. pneumoniae isolates (n = 258 BARNARDS). Yellow shading indicates isolates from other studies^15,22 causing neonatal sepsis. The outermost rings represent infant outcome (orange) and onset of sepsis (green), followed by the ST, where asterisks represent previously unknown STs. The leaf labels are the code names (coloured according to the study site) of isolates. The branch symbols in the centre denote the carriage of carbapenemase ARGs (bla_NDM variants (circles) and bla_OXA-48 group variants (squares)). NA, not applicable.

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