Table 1.
Strains included in this study.
| # | Species | Strain collection | Internal strain number | Group | NCBI/ENA Accession Number |
|---|---|---|---|---|---|
| 01 | Klebsiella pneumoniae | in-house | 602149-19 | Enterobacteriaceae | SAMN16951201 |
| 02 | Klebsiella oxytoca | in-house | 708776-17 | Enterobacteriaceae | SAMN12212273 |
| 03 | Klebsiella grimontii | in-house | 132656-17 | Enterobacteriaceae | SAMN12212117 |
| 04 | Klebsiella michiganensis | in-house | 401065-17 | Enterobacteriaceae | SAMN12212153 |
| 05 | Klebsiella aerogenes | in-house | 717657-17 | Enterobacteriaceae | SAMN12212322 |
| 06 | Klebsiella variicola | in-house | 717892-17 | Enterobacteriaceae | SAMN12212293 |
| 09 | Escherichia coli | in-house | 807627-2-16 | Enterobacteriaceae | SAMN16951202 |
| 10 | Escherichia coli | in-house | 807628-3-16 | Enterobacteriaceae | SAMN16951203 |
| 11 | Escherichia coli | in-house | 804255-13 | Enterobacteriaceae | SAMN16951204 |
| 12 | Escherichia coli | in-house | 805237-12 | Enterobacteriaceae | SAMN16951205 |
| 13 | Shigella flexneri | in-house | 300666-18 | Enterobacteriaceae | SAMN16951206 |
| 14 | Shigella flexneri | in-house | 301552-18 | Enterobacteriaceae | SAMN16951207 |
| 15 | Shigella sonnei | commercial | DSMZ-5570 | Enterobacteriaceae | SAMN16951208 |
| 16 | Shigella sonnei | in-house | 301974-17 | Enterobacteriaceae | SAMEA104430192 |
| 35 | Enterobacter sichuanensis | in-house | 403902-15 | Enterobacteriaceae | SAMN16951209 |
| 36 | Enterobacter hormaechei | commercial | ATCC-49162 | Enterobacteriaceae | SAMN16951210 |
| 37 | Enterobacter asburiae | commercial | ATCC-35956 | Enterobacteriaceae | SAMN16951211 |
| 38 | Enterobacter ludwigii | commercial | DSMZ-15213 | Enterobacteriaceae | SAMN16951212 |
| 07 | Listeria monocytogenes | in-house | 107373-13 | Listeria | SAMN16951213 |
| 08 | Listeria monocytogenes | in-house | O1910-17 | Listeria | SAMN16951214 |
| 17 | Burkholderia cepacia | in-house | 208050-16 | Burkholderia | SAMN16951215 |
| 18 | Burkholderia contaminans | in-house | O-13 | Burkholderia | SAMEA54114418 |
| 19 | Burkholderia multivorans | in-house | O-10 | Burkholderia | SAMEA54118168 |
| 20 | Burkholderia cenocepacia | in-house | O-3 | Burkholderia | SAMEA54110668 |
| 21 | Bordetella bronchiseptica | in-house | 502474-16 | Bordetella | SAMN16951216 |
| 22 | Bordetella pertussis | commercial | ATCC-9797 | Bordetella | SAMN16951217 |
| 23 | Bordetella parapertussis | commercial | ATCC-53893 | Bordetella | SAMN16951218 |
| 24 | Streptococcus pneumoniae | in-house | 144265-17 | Streptococcus | SAMN16951219 |
| 25 | Streptococcus infantis | in-house | 131226-17 | Streptococcus | SAMN16951220 |
| 26 | Streptococcus gordonii | commercial | ATCC-33399 | Streptococcus | SAMN16951221 |
| 27 | Streptococcus gallolyticus | in-house | PRA0000041 | Streptococcus | SAMN16951222 |
| 28 | Streptococcus lutetiensis | commercial | DSMZ-15350-TS | Streptococcus | SAMN16951223 |
| 29 | Streptococcus pseudopneumoniae | in-house | 610886-17 | Streptococcus | SAMN16951224 |
| 30 | Streptococcus equinus | commercial | ATCC-9812 | Streptococcus | SAMN16951225 |
| 31 | Streptococcus dysgalactiae | in-house | STO0000159 | Streptococcus | SAMN16951226 |
| 32 | Streptococcus dysgalactiae | in-house | 602125-13 | Streptococcus | SAMN16951227 |
| 39 | Staphylococcus aureus | in-house | 351358-18 | Staphylococcus | SAMN16951228 |
| 40 | Staphylococcus schweitzeri | commercial | DSM-28300-TS | Staphylococcus | SAMN16951229 |
| 41 | Staphylococcus argenteus | commercial | DSMZ-28299-TS | Staphylococcus | SAMN16951230 |
| 42 | Corynebacterium amycolatum | commercial | ATCC-700206 | Actinobacteria | SAMN16951231 |
| 43 | Corynebacterium urealyticum | commercial | DSMZ-7109 | Actinobacteria | SAMN16951232 |
| 44 | Gardnerella vaginalis | commercial | ATCC-14018 | Actinobacteria | SAMN16951233 |
| 45 | Winkia neuii | in-house | STO0000012 | Actinobacteria | SAMN16951234 |
| 46 | Actinomyces israelii | commercial | ATCC-10048 | Actinobacteria | SAMN16951235 |
| 47 | Pasteurella multocida | commercial | ATCC-11039 | Gram negative Anaerobes | SAMN16951236 |
| 33 | Bacteroides fragilis | in-house | 609216-11 | Gram negative Anaerobes | SAMN16951237 |
| 34 | Bacteroides fragilis | in-house | 600609-16 | Gram negative Anaerobes | SAMN16951238 |
Strains were either retrieved from in-house or commercial strain collections. Strains which are assigned the same ‘Group’ are expected to respond similarly to varying sample protocols, quantities of bacterial colony material applied and varying bacterial colony age.