Table 2. Data Collection, Refinement, and Model Statistics of MbtI-10, MbtI–Mg2+, and MbtI–Ba2+a.
MbtI-10 | MbtI–Mg2+ | MbtI–Ba2+ | |
---|---|---|---|
space group | P21 | I422 | P21 |
Unit–Cell Parameters | |||
a, b, c (Å) | 88.336, 111.687, 94.998 | 193.97, 193.97, 257.03 | 88.04, 116.90 94.09 |
α, β, γ (deg) | 90, 92.67, 90 | 90, 90, 90 | 90, 91.60, 90 |
Diffraction Data | |||
resolution range (Å) | 111.69–2.09 (2.13–2.09) | 154.83–2.11 (2.15–2.11) | 43.63–1.80 (1.85–1.80) |
wavelength (Å) | 0.97856 | 0.98012 | 0.98012 |
no. unique reflections | 108510 (5396) | 131041 (6551) | 173404 (11664) |
multiplicity | 7.0 (7.1) | 27.0 (26.5) | 6.8 (6.5) |
completeness (%) | 99.9 (99.9) | 93.9 (85.6) | 99.2 (90.3) |
average I/σ(I) | 8.0 (2.1) | 17.7 (1.4) | 14.6 (1.0) |
Rpimb | 0.063 (0.356) | 0.028 (0.546) | 0.030 (0595) |
CC(1/2) | 0.990 (0.803) | 0.998 (0.534) | 0.999 (0.622) |
Refinement Statistics | |||
Rworkc | 0.208 | 0.195 | 0.196 |
Rfreec | 0.240 | 0.217 | 0.214 |
No. of Non-H Atomsd | |||
protein | 12651 | 13151 | 13228 |
ligands | 65 | 198 | 51 |
water | 878 | 797 | 1351 |
Average B-Factorsd | |||
protein | 43.33 | 51.97 | 35.98 |
ligands | 56.33 | 89.33 | 43.89 |
water | 44.14 | 53.14 | 42.82 |
RMS Deviationsd | |||
bonds (Å) | 0.012 | 0.012 | 0.012 |
angles (deg) | 1.45 | 1.50 | 1.45 |
molprobity clashscored | 3.13 | 2.90 | 1.51 |
Ramachandran outliersd (%) | 0.00 | 0.00 | 0.00 |
Ramachandran favouredd (%) | 98.98 | 98.34 | 98.80 |
rotamer outliersd (%) | 1.09 | 1.11 | 1.11 |
C-β outliersd (%) | 0.00 | 0.00 | 0.00 |
PDB code | 6ZA4 | 6ZA5 | 6ZA6 |
Data were indexed and scaled with XDSME (MbtI–Ba2+) or autoPROC (MbtI-10 and MbtI–Mg2+), applying, in the latter case, an anisotropic resolution cut-off via STARANISO as implemented in autoPROC.30
Rpim = Σh[1/(/nh – 1)]1/2Σi|⟨Ih⟩Ih,i|/ΣhΣiIh,i, where Ih is the intensity of the unique reflection h, whereas Ii is the intensity of each of its symmetry-equivalent reflections. CC(1/2) according to Karplus.39
Rwork = Σ||Fo| – |Fc||/Σ|Fo|, where Fo and Fc are the observed and calculated structure factor amplitudes. Five percent of the reflections were reserved for the calculation of Rfree.
Calculated with phenix.validate.37