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. 2020 Jun 12;63(13):7066–7080. doi: 10.1021/acs.jmedchem.0c00373

Table 2. Data Collection, Refinement, and Model Statistics of MbtI-10, MbtI–Mg2+, and MbtI–Ba2+a.

  MbtI-10 MbtI–Mg2+ MbtI–Ba2+
space group P21 I422 P21
Unit–Cell Parameters
abc (Å) 88.336, 111.687, 94.998 193.97, 193.97, 257.03 88.04, 116.90 94.09
α, β, γ (deg) 90, 92.67, 90 90, 90, 90 90, 91.60, 90
Diffraction Data
resolution range (Å) 111.69–2.09 (2.13–2.09) 154.83–2.11 (2.15–2.11) 43.63–1.80 (1.85–1.80)
wavelength (Å) 0.97856 0.98012 0.98012
no. unique reflections 108510 (5396) 131041 (6551) 173404 (11664)
multiplicity 7.0 (7.1) 27.0 (26.5) 6.8 (6.5)
completeness (%) 99.9 (99.9) 93.9 (85.6) 99.2 (90.3)
average I/σ(I) 8.0 (2.1) 17.7 (1.4) 14.6 (1.0)
Rpimb 0.063 (0.356) 0.028 (0.546) 0.030 (0595)
CC(1/2) 0.990 (0.803) 0.998 (0.534) 0.999 (0.622)
Refinement Statistics
Rworkc 0.208 0.195 0.196
Rfreec 0.240 0.217 0.214
No. of Non-H Atomsd
protein 12651 13151 13228
ligands 65 198 51
water 878 797 1351
Average B-Factorsd
protein 43.33 51.97 35.98
ligands 56.33 89.33 43.89
water 44.14 53.14 42.82
RMS Deviationsd
bonds (Å) 0.012 0.012 0.012
angles (deg) 1.45 1.50 1.45
molprobity clashscored 3.13 2.90 1.51
Ramachandran outliersd (%) 0.00 0.00 0.00
Ramachandran favouredd (%) 98.98 98.34 98.80
rotamer outliersd (%) 1.09 1.11 1.11
C-β outliersd (%) 0.00 0.00 0.00
PDB code 6ZA4 6ZA5 6ZA6
a

Data were indexed and scaled with XDSME (MbtI–Ba2+) or autoPROC (MbtI-10 and MbtI–Mg2+), applying, in the latter case, an anisotropic resolution cut-off via STARANISO as implemented in autoPROC.30

b

Rpim = Σh[1/(/nh – 1)]1/2Σi|⟨IhIh,i|/ΣhΣiIh,i, where Ih is the intensity of the unique reflection h, whereas Ii is the intensity of each of its symmetry-equivalent reflections. CC(1/2) according to Karplus.39

c

Rwork = Σ||Fo| – |Fc||/Σ|Fo|, where Fo and Fc are the observed and calculated structure factor amplitudes. Five percent of the reflections were reserved for the calculation of Rfree.

d

Calculated with phenix.validate.37