Table 2. OHE of the SNP sets out of the 50 random population groupings.
Populations | 1—SNP discovery | 2—cluster removal | 3—equal spacing | 4—validation | 5—down sampling |
---|---|---|---|---|---|
Discovery | 0.76 ± 0.004a | 0.75 ± 0.004a | 1.13 ± 0.006a | 1.28 ± 0.006b | 1.33 ± 0.007a |
Validation | 0.61 ± 0.003b | 0.60 ± 0.003b | 1.11 ± 0.004b | 1.29 ± 0.004b | 1.29 ± 0.005b |
Application | 0.61 ± 0.003b | 0.61 ± 0.003b | 1.12± 0.004ab | 1.35 ± 0.004a | 1.34 ± 0.004a |
Outgroup | -0.85 ± 0.008c | -0.86 ± 0.008c | -0.85 ± 0.015c | -0.84 ± 0.017c | -0.84 ± 0.019c |
LSMEANS for OHE ± standard error.
An OHE of zero means no bias and an OHE of 1 means doubling the Hexp.
Different lowercase letters within columns indicate significant differences to the 5% level.