Table 3. Diffusion Coefficients (10–5 cm2/s) Calculated from Mean Square Displacement Analysis of the All-Atom Simulations Compared with Experimental Resultsa.
| experimental | all-atom w/ partial charges | all-atom w/o partial charges | |
|---|---|---|---|
| C6H12 | 1.488 | 1.50 ± 0.02 | 1.38 ± 0.02 |
| ADOH | 0.478 | 0.63 ± 0.03 | 0.48 ± 0.01 |
| H2O | 2.3043 | 3.90 ± 0.01 | |
| ADOH | 0.35 ± 0.02 |
First column, experimental results (250 mM); second column, all-atom simulations without partial charges; and third column, all-atom simulations with partial charges. The concentrations are 200 mM for simulations in C6H12 and 50 mM for H2O.