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. 2021 Mar 30;11:7149. doi: 10.1038/s41598-021-86472-z

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Maximum Likelihood (ML) phylogenetic tree constructed using IQ-TREE 1.6.12 based on nearly complete genome sequences [open reading frames (ORFs) 0–5] from 50 sugarcane yellow leaf virus (SCYLV) isolates. ML analysis was carried out using nucleotide identity distances and 1000 bootstrap replicates (Bootstrap values > 60% are shown at nodes). The scale bar indicates the number of substitutions per nucleotide. Different geographic regions are represented with red, green, and purple lines for Asia (filled square), Africa (filled circle), and America (filled triangle), respectively. The six SCYLV isolates from sugarcane obtained in the present study are indicated by the solid pentagram (filled star). A potato leafroll virus (PLRV; NCBI accession no. NC_001747) isolate served as an outgroup (filled diamond). The acronyms of each SCYLV genotype based on their originally geographical origins: BRA (Brazil), HAW (Hawaii), PER (Peru), CHN (China), REU (Reunion), FLA (Florida), IND (India), and CUB (Cuba).