TABLE 1.
Description |
CD8+ T cell |
T cell (general) |
B cell |
Tfh |
M1 |
M2 |
TAM |
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Gene markers | CD8A | CD8B | CD3D | CD3E | CD2 | CD19 | CD79A | BCL6 | NOS2 | ROS | ARG1 | MRC1 | HLA-G | CD80 | CD86 | ||
TCP1 | Tumor | R | –0.039 | 0.014 | –0.092 | –0.072 | –0.017 | –0.088 | –0.1 | –0.078 | 0.024 | 0.12 | –0.031 | 0.019 | –0.0011 | 0.17 | 0.11 |
P | 0.19 | 0.64 | * | 0.018 | 0.59 | * | ** | 0.01 | 0.43 | *** | 0.3 | 0.52 | 0.97 | *** | *** | ||
Normal | R | 0.43 | 0.38 | 0.17 | 0.19 | 0.27 | –0.016 | 0.038 | –0.057 | 0.15 | –0.14 | 0.3 | –0.13 | –0.035 | 0.18 | 0.022 | |
P | *** | *** | 0.066 | 0.046 | * | 0.87 | 0.69 | 0.55 | 0.11 | 0.14 | * | 0.16 | 0.72 | 0.056 | 0.82 | ||
CCT2 | Tumor | R | –0.058 | –0.05 | –0.1 | –0.09 | –0.069 | –0.082 | –0.1 | –0.032 | –0.025 | 0.015 | –0.019 | –0.019 | –0.028 | 0.011 | –0.031 |
P | 0.056 | 0.1 | ** | * | 0.022 | * | ** | 0.29 | 0.4 | 0.63 | 0.53 | 0.54 | 0.35 | 0.72 | 0.31 | ||
Normal | R | 0.42 | 0.37 | 0.21 | 0.19 | 0.22 | 0.022 | 0.09 | –0.17 | 0.061 | –0.12 | 0.27 | –0.23 | 0.0058 | 0.22 | –0.0071 | |
P | *** | *** | 0.023 | 0.041 | 0.02 | 0.81 | 0.34 | 0.067 | 0.52 | 0.21 | * | 0.016 | 0.95 | 0.019 | 0.94 | ||
CCT3 | Tumor | R | –0.11 | 0.056 | –0.15 | –0.15 | –0.11 | –0.15 | –0.19 | –0.074 | 0.018 | –0.0019 | 0.0033 | –0.06 | 0.043 | 0.081 | –0.04 |
P | ** | 0.064 | *** | *** | ** | *** | *** | 0.015 | 0.56 | 0.95 | 0.91 | 0.048 | 0.16 | * | 0.18 | ||
Normal | R | 0.45 | 0.53 | 0.32 | 0.3 | 0.3 | 0.09 | 0.18 | –0.29 | 0.072 | –0.13 | 0.27 | –0.46 | 0.15 | 0.19 | –0.17 | |
P | *** | *** | ** | ** | * | 0.35 | 0.061 | * | 0.45 | 0.19 | * | *** | 0.11 | 0.049 | 0.07 | ||
CCT4 | Tumor | R | –0.041 | 0.056 | –0.082 | –0.084 | –0.028 | –0.1 | –0.12 | –0.15 | 0.054 | 0.085 | –0.037 | 0.026 | 0.02 | 0.15 | 0.067 |
P | 0.17 | 0.064 | * | * | 0.35 | ** | *** | *** | 0.075 | * | 0.22 | 0.39 | 0.5 | *** | 0.027 | ||
Normal | R | 0.5 | 0.53 | 0.26 | 0.31 | 0.32 | –0.0042 | 0.095 | –0.31 | 0.051 | –0.13 | 0.3 | –0.45 | –0.0014 | 0.067 | 0.19 | |
P | *** | *** | * | * | ** | 0.96 | 0.32 | *** | 0.59 | 0.17 | * | *** | 0.89 | 0.48 | 0.043 | ||
CCT5 | Tumor | R | –0.031 | 0.036 | –0.094 | –0.079 | –0.031 | –0.088 | –0.11 | –0.041 | 0.053 | 0.062 | –0.014 | –0.014 | 0.15 | 0.19 | 0.095 |
P | 0.31 | 0.23 | * | * | 0.31 | * | ** | 0.18 | 0.079 | 0.041 | 0.64 | 0.65 | *** | *** | * | ||
Normal | R | 0.27 | 0.22 | 0.17 | 0.17 | 0.18 | 0.09 | 0.11 | –0.012 | 0.0042 | 0.05 | 0.12 | 0.052 | 0.14 | 0.29 | 0.19 | |
P | * | 0.019 | 0.066 | 0.081 | 0.058 | 0.35 | 0.25 | 0.9 | 0.96 | 0.6 | 0.19 | 0.58 | 0.15 | * | 0.043 | ||
CCT6A | Tumor | R | –0.033 | –0.0098 | –0.032 | –0.031 | –0.012 | –0.039 | –0.044 | –0.063 | 0.0036 | 0.0076 | –0.0088 | –0.012 | –0.0018 | 0.038 | 0.036 |
P | 0.28 | 0.75 | 0.29 | 0.3 | 0.7 | 0.2 | 0.15 | 0.037 | 0.9 | 0.8 | 0.77 | 0.7 | 0.95 | 0.21 | 0.24 | ||
Normal | R | 0.54 | 0.49 | 0.37 | 0.37 | 0.4 | 0.11 | 0.16 | –0.36 | –0.052 | 0.05 | 0.23 | –0.28 | 0.092 | 0.27 | 0.096 | |
P | *** | *** | *** | *** | *** | 0.24 | 0.086 | *** | 0.58 | 0.6 | 0.014 | * | 0.33 | * | 0.31 | ||
CCT6B | Tumor | R | –0.096 | –0.099 | –0.14 | –0.12 | –0.12 | 0.0011 | –0.13 | 0.12 | –0.011 | –0.027 | –0.01 | 0.0068 | –0.03 | –0.079 | –0.068 |
P | * | * | *** | *** | *** | –0.099 | *** | *** | 0.72 | 0.38 | 0.73 | 0.82 | 0.33 | * | 0.025 | ||
Normal | R | 0.39 | 0.4 | 0.17 | 0.18 | 0.18 | 0.021 | 0.31 | –0.22 | 0.24 | –0.18 | 0.26 | –0.41 | 0.01 | 0.082 | –0.15 | |
P | *** | *** | 0.069 | 0.054 | 0.054 | 0.83 | 0.097 | 0.019 | 0.012 | 0.064 | * | *** | 0.92 | 0.39 | 0.11 | ||
CCT7 | Tumor | R | –0.11 | –0.026 | –0.14 | –0.15 | –0.12 | –0.14 | –0.17 | –0.2 | 0.063 | 0.052 | –0.0082 | –0.045 | 0.012 | 0.044 | –0.083 |
P | ** | 0.39 | *** | *** | *** | *** | *** | *** | 0.038 | 0.09 | 0.79 | 0.14 | 0.7 | 0.15 | * | ||
Normal | R | 0.28 | 0.39 | 0.18 | 0.16 | 0.15 | –0.037 | 0.03 | –0.4 | 0.012 | –0.078 | 0.15 | –0.35 | 0.11 | 0.03 | –0.13 | |
P | * | *** | 0.053 | 0.091 | 0.12 | 0.7 | 0.75 | *** | 0.9 | 0.41 | 0.11 | *** | 0.26 | 0.75 | 0.16 | ||
CCT8 | Tumor | R | –0.084 | –0.055 | –0.13 | –0.11 | –0.062 | –0.12 | –0.15 | –0.081 | 0.012 | 0.069 | 0.0017 | 0.0034 | –0.0033 | 0.11 | 0.059 |
P | * | 0.069 | *** | ** | 0.042 | *** | *** | * | 0.68 | 0.024 | 0.96 | 0.91 | 0.91 | *** | 0.054 | ||
Normal | R | 0.54 | 2.1e−07 | 0.34 | 0.35 | 0.4 | 0.13 | 0.18 | –0.17 | 0.056 | –0.15 | 0.36 | –0.35 | 0.076 | 0.22 | –0.059 | |
P | *** | 0.47 | ** | ** | *** | 0.17 | 0.055 | 0.07 | 0.56 | 0.11 | *** | *** | 0.43 | 0.022 | 0.54 |
Tfh, follicular helper T cell; TAM, tumor-correlated macrophage; R, R-value of Spearman’s correlation; P, P-value of Spearman’s correlation. *P < 0.01; **P < 0.001; ***P < 0.0001.