TABLE 6.

Genome-wide significant SNPs associated with IMF.

SNP	Chr1	Location (bp)	MAF	P value	Located gene	Flanking genes	Distance2	Method3
ALGA0006955	1	169,163,416	0.09	6.56E-06	–	ENSSSCG0000004 5715/NR2E3	−362,891/+197,313	I
ALGA0031885	5	47,014,709	0.24	2.66E-05	ITPR2	INTS13/–	−154,156/–	I
H3GA0023123	7	112,784,720	0.15	1.94E-05	–	RPS6KA5 ENSSSCG0000 0002438	−31,103/46,939	I
DBWU0000868	9	8,933,427	0.12	1.09E-06	POLD3	LIPT2/CHRDL2	−92,597/+80,680	I
WU_10.2_10_48312614	10	43,603,091	0.38	5.59E-07/4.15E-06	ST8SIA6	VIM/ENSSSCG000 00046521	−76,919/180,018	I, II
WU_10.2_10_47748520	10	43,105,103	0.37	1.25E-05	CUBN	ENSSSCG0000004 8231/TRDMT1	−20,418/329,341	II
DRGA0010501	10	43,457,312	0.20	5.82E-06	TRDMT1	CUBN/VIM	−11,444/+58,156	II
WU_10.2_10_48118152	10	43,496,534	0.15	5.30E-06	TRDMT1	CUBN/VIM	−81,921/+20,773	II
ASGA0059395	13	177,464,038	0.43	1.33E-06	ROBO2	ENSSSCG00000046597/–	−462,956/–	I

¹SNP located on the Sus scrofa Build 11.1 assembly.

²SNP designated as within a gene distance from the flanking gene-coding region in the Sus scrofa Build 11.1 assembly.

³Method numbers (I, II) represent the FarmCPU and MLM, respectively.