TABLE 7.
Genome-wide significant SNPs associated with marbling score.
| SNP | Chr1 | Location (bp) | MAF | P value | Located gene | Flanking genes | Distance2 | Method3 |
| ALGA0018939 | 3 | 50,684,383 | 0.11 | 1.38E-08 | – | – | – | I |
| WU_10.2_4_111643880 | 4 | 101,653,530 | 0.36 | 1.29E-08 | HAO2 | ENSSSCG00000 006719/WARS2 | −79,702/+133970 | I |
| M1GA0013120 | 9 | 72,761,757 | 0.12 | 1.65E-10/2.32E-06 | – | ENSSSCG0000004 8637/SAMD9 | −222,088/+202058 | I, II |
| ASGA0044293 | 9 | 110,280,507 | 0.49 | 7.12E-07 | – | ENSSSCG00000034739/ENSSSCG00000015460 | −470,585/+179,469 | I |
| WU_10.2_10_5204072 | 10 | 3,387,068 | 0.46 | 8.68E-10 | – | BRINP3/– | −19,445/– | I |
| WU_10.2_11_53938211 | 11 | 49,300,307 | 0.26 | 2.99E-09 | MYCBP2 | FBXL3/SCEL | −149,298/+351,366 | I |
| WU_10.2_12_33077453 | 12 | 32,245,751 | 0.43 | 1.67E-12 | – | ENSSSCG00000025681/ANKFN1 | −89,735/+141,018 | I |
1SNP located on the Sus scrofa Build 11.1 assembly.
2SNP designated as within a gene distance from the flanking gene-coding region in the Sus scrofa Build 11.1 assembly.
3Method numbers (I, II) represent the FarmCPU and MLM, respectively.