Table 1.
The Statistics for the Genome Assemblies of Ampulex compressa and Cerceris arenaria
Statistics | A. compressa | C. arenaria |
---|---|---|
Total number of scaffolds | 18,453 | 182,826 |
Assembly size (bp) | 279,244,254 | 358,163,941 |
Amount of Ns per 100 kb (bp) | 877 | 7,422 |
Size of smallest scaffold (bp) | 93 | 83 |
Size of largest scaffold (bp) | 16,314,322 | 9,578,785 |
Total number of nucleotide base counts | ||
Count of A | 79,307,969 | 102,095,833 |
Count of C | 59,083,877 | 63,903,708 |
Count of G | 59,096,860 | 63,923,668 |
Count of N | 2,447,908 | 26,581,550 |
Count of T | 79,307,640 | 101,659,182 |
GC content (%) | 42.70 | 38.55 |
N and L statistics | ||
N50 (bp) | 9,128,341 | 2,093,498 |
N75 (bp) | 2,712,415 | 743,455 |
L50 (bp) | 12 | 40 |
L75 (bp) | 28 | 109 |
Number of sequences (bp) | ||
≥0 | 18,453 | 182,826 |
≥1,000 | 668 | 5,547 |
≥5,000 | 215 | 623 |
≥10,000 | 170 | 399 |
≥25,000 | 146 | 323 |
≥50,000 | 133 | 278 |
Assembly size based only on sequences (bp) | ||
≥0 | 279,244,254 | 358,163,941 |
≥1,000 | 275,197,192 | 328,427,061 |
≥5,000 | 274,378,842 | 320,283,610 |
≥10,000 | 274,062,538 | 318,839,227 |
≥25,000 | 273,713,023 | 317,700,425 |
≥50,000 | 273,276,827 | 316,179,035 |
Note.—Both genomes were sequenced using Illumina HiSeq sequencer. Four libraries were generated (i.e., 250-bp paired-end, 800-bp paired-end, 3-kb mate pair, 8-kb mate pair) and sequenced to an estimated coverage depth of 62×, 21×, 23×, and 18× (Cerceris arenaria), and 94×, 19×, 25×, and 13× (Ampulex compressa). The genome assemblies were inferred with Platanus (Kajitani et al. 2019).