Table 4.
Comparison of the numbers of errors in coding and non-coding regions before and after running Homopolish using the Zymo R9.4 dataset
| Coding regions errors | Non-coding regions errors | |||||
|---|---|---|---|---|---|---|
| Before | After | Correction ratio | Before | After | Correction ratio | |
| B. subtilis | 446 | 80 | 82.06% | 232 | 165 | 28.88% |
| E. faecalis | 244 | 21 | 91.39% | 176 | 34 | 80.68% |
| S. aureus | 306 | 38 | 87.58% | 100 | 17 | 83.00% |
| L. monocytogenes | 160 | 19 | 88.13% | 80 | 26 | 67.50% |
| P. aeruginosa | 666 | 30 | 95.50% | 279 | 8 | 97.13% |
| S. enterica | 469 | 66 | 85.93% | 118 | 13 | 88.98% |
| E. coli | 544 | 163 | 70.04% | 201 | 141 | 29.85% |
DFAST was used for the annotation of coding/non-coding regions in each genome