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. Author manuscript; available in PMC: 2021 Sep 1.
Published in final edited form as: Nat Genet. 2021 Mar 1;53(3):322–331. doi: 10.1038/s41588-021-00778-2

Extended Data Fig. 2. Identifying optimal parameters for calculating perturbation signature.

Extended Data Fig. 2

(A)Scatterplots showing the per cell correlation of mixscape classification posterior probabilities between k =20 and k=3, k=10, k=30 and k=200.

(B) Mixscape classification agreement k=20 and all other k.

(C)Same as in (A) only this time comparing finding neighbors before and after integration. In both cases k was set to 20.

(D)Same as in (B) only this time showing classification agreement between before and after integration.