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. 2021 Mar 22;1(3):e85. doi: 10.1002/cpz1.85

Figure 6.

Figure 6

Sample data for Alternate Protocol 1 followed by Alternate Protocol 2. (A) Protocol workflow: In‐solution digestion of 5e6 RMPI 1788 cells followed by SP2 cleanup of the sample yields sufficient peptide material for 50 injections of 1 μg per injection. This workflow yields >4000 proteins per injection. PSMs, peptide spectrum matches. (B) Dot plot of percentage of peptides identified as fully tryptic with and without missed cleavages or semi‐tryptic. (C) Number of proteins annotated among various cellular components based on Gene Ontology, as annotated by ProteomeDiscoverer 2.4.