TABLE 2.
Putative cleavage sites at the junctions between non‐structural proteins in four novel common magpie CoV compared with those in other deltacoronaviruses
| Cleavage site in | NSP pair | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NSP2/NSP3 | NSP3/NSP4 | NSP4/NSP5 | NSP5/NSP6 | NSP6/NSP7 | NSP7/NSP8 | NSP8/NSP9 | NSP9/NSP10 | NSP10/NSP11 | NSP12/NSP13 | NSP13/NSP14 | NSP14/NSP15 | NSP15/NSP16 | |
| JQ065042|HKU15|Porcine | AG/SD | AG/AP | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AS | LQ/NS | LQ/AS | LQ/SS | LQ/NL | LQ/SL |
| JQ065044|HKU16|White‐eye | AG/SD | AG/AR | LQ/AG | LQ/SN | VQ/NK | LQ/AV | IQ/NN | LQ/AN | LQ/GS | LQ/AS | LQ/SS | LQ/NL | VQ/SL |
| JQ065045|HKU17‐China|Sparrow | AG/SD | AG/AP | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/SS | LQ/NL | LQ/SL |
| JQ065046|HKU18|Magpie‐robin | AG/AD | AG/AM | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/AG | LQ/NL | LQ/SL |
| JQ065047|HKU19|Night heron | VG/GL | TG/GN | VQ/AG | LQ/GT | VQ/NK | LQ/VV | LQ/NN | LQ/SS | LQ/LG | LQ/AT | VQ/SL | LQ/TL | VQ/AL |
| JQ065048|HKU20|Wigeon | DG/VY | GG/SK | VQ/SG | LQ/AN | VQ/NR | LQ/VV | CQ/NN | LQ/AN | LQ/SN | LQ/AT | VQ/AE | LQ/TL | LQ/SL |
| JQ065049|HKU21|Common‐moorhen | AG/VS | AG/KF | LQ/AG | LQ/AS | VQ/NR | LQ/AV | IQ/NN | LQ/AT | LQ/NT | LQ/AS | VQ/CS | LQ/TI | VQ/SL |
| LC364342|HKU27|Falcon | AG/SD | AG/RK | LQ/AG | LQ/SG | VQ/NR | LQ/AV | LQ/NN | LQ/AN | LQ/GS | LQ/AS | LQ/SS | LQ/NL | VQ/AL |
| LC364343|HKU28|Houbara | AG/SD | AG/RK | LQ/AG | LQ/SG | VQ/NR | LQ/AV | LQ/NN | LQ/AN | LQ/GS | LQ/AS | LQ/SS | LQ/NL | VQ/AL |
| LC364344|HKU29|Pigeon | AG/SD | AG/RK | LQ/AG | LQ/SG | VQ/NR | LQ/AV | LQ/NN | LQ/AN | LQ/GS | LQ/AS | LQ/SS | LQ/NL | VQ/AL |
| LC364345|HKU30‐UAE|Quail | AG/SD | AG/AP | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| MH532440|HKU30‐Poland|Quail | AG/SD | AG/VP | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NA | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| Common magpie CoV HNU1−1 | AG/SD | AG/VP | LQ/AG | LQ/AG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NA | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| Common magpie CoV HNU1−2 | AG/SD | AG/VP | LQ/AG | LQ/AG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NA | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| Common magpie CoV HNU2 | AG/SD | AG/AP | LQ/AG | LQ/AG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| Common magpie CoV HNU3 | AG/SD | AG/AP | LQ/AG | LQ/AG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| MG812375|HKU17‐USA|Sparrow | AG/SD | AG/AP | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/SG | LQ/NL | LQ/SL |
| FJ376619|HKU11|Bulbul | AG/SD | AG/SD | LQ/AG | LQ/SG | VQ/NK | LQ/AV | IQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/SG | LQ/NL | VQ/SL |
| FJ376621|HKU12|Thrush | AG/SD | AG/SA | LQ/AG | LQ/SG | VQ/NK | LQ/AV | IQ/NN | LQ/AN | LQ/SS | LQ/AS | VQ/SS | LQ/NL | VQ/SL |
| FJ376622|HKU13|Munia | AG/AD | AG/AV | LQ/AG | LQ/SG | VQ/NK | VQ/AV | LQ/NN | LQ/AN | LQ/NS | LQ/AS | LQ/AG | LQ/NL | LQ/SL |
The bold values mean the sequences of the cleavage sites.