Table 1.

Estimated correlations between the transformed z-scores (from P-value) across the data types with 95% bootstrap-based confidence intervals (B=1000) for TCGA bladder cancer data and TCGA pancreatic cancer data integration analysis by IMIX-BIC

TCGA bladder cancer				TCGA pancreatic cancer
Component	M & E	M & CNV	E & CNV	Component	E & CNV
1 (M-,E-,CNV-)	0.015 (-0.039, 0.072)	0.091 (0.037, 0.14)	−0.016 (-0.070, 0.043)	1 (E-,CNV-)	0.040 (-0.047, 0.13)
2 (M+,E-,CNV-)	0.070 (0.014, 0.12)	−0.012 (-0.060, 0.031)	0.0049 (-0.064, 0.075)	2 (E+,CNV-)	0.11 (-0.012, 0.21)
3 (M-,E+,CNV-)	0.14 (0.051, 0.23)	0.090 (0.016, 0.17)	−0.10 (-0.19, -0.022)	3 (E-,CNV+)	0.016 (-0.019, 0.049)
4 (M-,E-,CNV+)	−0.099 (-0.59, 0.40)	0.35 (-0.085, 0.73)	−0.059 (-0.53, 0.36)	4 (E+,CNV+)	0.12 (0.071, 0.18)
5 (M+,E+,CNV-)	0.25 (0.20, 0.31)	−0.037 (-0.082, 0.013)	0.038 (-0.023, 0.097)
6 (M+,E-,CNV+)	0.038 (-0.22, 0.25)	−0.037 (-0.27, 0.22)	−0.088 (-0.40, 0.26)
7 (M-,E+,CNV+)	0.21 (-0.16, 0.56)	0.13 (-0.27, 0.49)	0.12 (-0.29, 0.50)
8 (M+,E+,CNV+)	0.19 (0.021, 0.38)	0.10 (-0.049, 0.26)	0.080 (-0.13, 0.28)

Note: Confidence intervals not covering 0 are in boldface.

M, methylation; E, gene expression; CNV, copy number variation.