TABLE 2.
Summary descriptions of the numbers and proportions of differentially expressed genes (DEGS) according to genotype (gt) and expression category.
| Expression category1 | gt-9 |
gt-17 |
gt-18 |
|||||||||||
| GOs2 | DEGs3 | % DEGs4 | Total DEGs5 | GOs | DEGs | % DEGs | Total DEGs | GOs | DEGs | % DEGs | Total DEGs | |||
| Leaf | down- regulated DEGs | d-n-n | 0 | – | – | 72 | 0 | – | – | 7 | 0 | – | – | 62 |
| d-d-n | 63 | 112 | 55 | 202 | 2 | 2 | 25 | 8 | 386 | 379 | 90 | 421 | ||
| d-d-d | 38 | 17 | 46 | 37 | 0 | – | – | 2 | 60 | 99 | 71 | 140 | ||
| n-d-d | 2 | 3 | 4 | 85 | 360 | 596 | 89 | 668 | 56 | 183 | 49 | 372 | ||
| n-d-n | 88 | 337 | 76 | 446 | 177 | 380 | 86 | 442 | 60 | 554 | 68 | 820 | ||
| n-n-d | 0 | – | – | 41 | 19 | 120 | 48 | 252 | 0 | – | – | 100 | ||
| up-regulated DEGs | u-n-n | 1 | 5 | 9 | 55 | 0 | – | – | 14 | 0 | – | – | 47 | |
| u-u-n | 66 | 89 | 61 | 145 | 0 | – | – | 51 | 120 | 192 | 83 | 232 | ||
| u-u-u | 26 | 6 | 60 | 10 | 0 | – | – | 1 | 71 | 45 | 75 | 60 | ||
| n-u-u | 18 | 141 | 69 | 205 | 57 | 222 | 73 | 303 | 207 | 637 | 88 | 724 | ||
| n-u-n | 32 | 247 | 69 | 357 | 48 | 300 | 88 | 341 | 109 | 832 | 87 | 961 | ||
| n-n-u | 0 | – | – | 133 | 184 | 583 | 93 | 630 | 5 | 26 | 20 | 133 | ||
| Up and down regulated DEGs | d-u-u | 0 | – | – | 3 | 0 | – | – | 0 | 0 | – | – | 3 | |
| u-d-d | 0 | – | – | 0 | 0 | – | – | 0 | 0 | – | – | 1 | ||
| d-d-u | 0 | – | – | 4 | 0 | – | – | 0 | 0 | – | – | 1 | ||
| u-u-d | 0 | – | – | 0 | 0 | – | – | 0 | 0 | – | – | 0 | ||
| d-n-u | 4 | 5 | 9 | 53 | 0 | – | – | 3 | 0 | – | – | 16 | ||
| u-n-d | 0 | – | – | 6 | 0 | – | – | 1 | 0 | – | – | 23 | ||
| Root | down- regulated DEGs | d-n-n | 82 | 297 | 69 | 430 | 0 | – | – | 13 | 140 | 227 | 75 | 303 |
| d-d-n | 182 | 645 | 80 | 806 | 5 | 24 | 22 | 110 | 197 | 295 | 80 | 367 | ||
| d-d-d | 13 | 9 | 29 | 31 | 0 | – | – | 4 | 5 | 23 | 88 | 26 | ||
| n-d-d | 25 | 89 | 74 | 120 | 5 | 14 | 41 | 34 | 31 | 142 | 68 | 210 | ||
| n-d-n | 34 | 328 | 71 | 463 | 65 | 380 | 78 | 488 | 36 | 305 | 75 | 404 | ||
| n-n-d | 18 | 60 | 56 | 107 | 10 | 11 | 65 | 17 | 20 | 115 | 51 | 226 | ||
| up-regulated DEGs | u-n-n | 35 | 262 | 71 | 367 | 0 | – | – | 7 | 9 | 14 | 15 | 93 | |
| u-u-n | 85 | 211 | 78 | 272 | 22 | 4 | 8 | 49 | 0 | – | – | 80 | ||
| u-u-u | 13 | 17 | 22 | 79 | 17 | 5 | 42 | 12 | 23 | 24 | 38 | 64 | ||
| n-u-u | 57 | 177 | 57 | 309 | 9 | 16 | 20 | 81 | 48 | 143 | 44 | 324 | ||
| n-u-n | 44 | 262 | 65 | 406 | 104 | 309 | 75 | 413 | 46 | 116 | 52 | 224 | ||
| n-n-u | 21 | 124 | 58 | 212 | 0 | – | – | 16 | 24 | 48 | 21 | 233 | ||
| Up and down regulated DEGs | d-u-u | 0 | – | – | 3 | 0 | – | – | 0 | 0 | – | – | 3 | |
| u-d-d | 0 | – | – | 1 | 0 | – | – | 0 | 0 | – | – | 2 | ||
| d-d-u | 0 | – | – | 13 | 0 | – | – | 0 | 9 | 2 | 40 | 5 | ||
| u-u-d | 0 | – | – | 5 | 0 | – | – | 0 | 0 | – | – | 0 | ||
| d-n-u | 12 | 64 | 49 | 130 | 0 | – | – | 0 | 4 | 4 | 5 | 87 | ||
| u-n-d | 19 | 60 | 63 | 95 | 0 | – | – | 1 | 10 | 5 | 13 | 40 | ||
1Expression pattern of DEGs contributing to enrichment of GO terms. d, down-regulated; u, up-regulated; n, not significantly down- or up-regulated; x-y-z, d, u, or n relating to the 35/15 (x), 35/5 (y), and 15/5 (z) sampling point comparisons.2GOs, number of significantly enriched GO terms.3DEGs contributing to GO term enrichment.4% total number of DEGs contributing to enriched GO terms.5Total number of DEGs in expression category.