Table 1.
Conserved Regions (CnRs) as derived from 10,664 SARS-CoV-2 genomes with associated details.
| DNA sequence of | Protein | Length | BLAST Specificity | % of BLAST Specificity | Coding | Starting | Ending | Length | Coded |
|---|---|---|---|---|---|---|---|---|---|
| Conserved Region (CnR) | Sequence | of CnR | Score of CnR | Score as Query Coverage | Region (CR) | Coordinate | Coordinate | of Protein | Proteins |
| 7622-GTTAATTGTGATACATTCTGTGCTGGTAGTACATTTATTAGTGATGAAGTTGCGAGAGAC-7681 | VNCDTFCAGSTFISDEVARD | 60 | 111 | 100 | ORF1ab | 266 | 21,552 | 21,287 | NSP3 |
| 8918-TTACCTAGAGTTTTTAGTGCAGTTGGTAACATCTGTTACACACCATCAAAACTTATAGAGTACACTG-8984 | LPRVFSAVGNICYTPSKLIEYT | 67 | 124 | 100 | ORF1ab | 266 | 21,552 | 21,287 | NSP4 |
| 11277-ATACTAGTTTGTCTGGTTTTAAGCTAAAAGACTGTGTTATGTATGCATCAGCTGTAGTGTTACTAATCCTTATGACAGCAAGAACTGTGTATGATGATGGTGCTAGGAGAGTGTGGACA-11395 | TSLSGFKLKDCVMYASAVVLLILMTARTVYDDGARRVWT | 119 | 220 | 100 | ORF1ab | 266 | 21,552 | 21,287 | NSP6 |
| 12,438-CCTTGAACATAATACCTCTTACAACAGCAGCCAAACTAATGGTTGTCATACCAGACTATAAC-12499 | LNIIPLTTAAKLMVVIPDYN | 62 | 115 | 100 | ORF1ab | 266 | 21,552 | 21,287 | NSP8 |
| 13,924-TGGTATGATTTTGTAGAAAACCCAGATATATTACGCGTATACGCCAACTTAGGTGAACGTGTACGCCAAGCTTTGTT-14000 | WYDFVENPDILRVYANLGERVRQAL | 77 | 143 | 100 | ORF1ab | 266 | 21,552 | 21,287 | RdRp |
| 15,607-TTACAACACAGACTTTATGAGTGTCTCTATAGAAATAGAGATGTTGACACAGACTTTGTGAATGAGTTTTACGCAT-15682 | LQHRLYECLYRNRDVDTDFVNEFYA | 76 | 141 | 100 | ORF1ab | 266 | 21,552 | 21,287 | RdRp |
| 16,730-TTTCATGGGAAGTTGGTAAACCTAGACCACCACTTAACCGAAATTATGTCTTTACTGGTTATCGTGTAACTAAAAACAGTAAAGTACAAAT-16820 | SWEVGKPRPPLNRNYVFTGYRVTKNSKVQ | 91 | 169 | 100 | ORF1ab | 266 | 21,552 | 21,287 | Helicase |
| 17,215-ATAGATAAATGTAGTAGAATTATACCTGCACGTGCTCGTGTAGAGTGTTTTGATAAATTCAAAGTGAATTCAACATTAGAACAGTATGT-17303 | IDKCSRIIPARARVECFDKFKVNSTLEQY | 89 | 165 | 100 | ORF1ab | 266 | 21,552 | 21,287 | Helicase |
| 17,612-ATAAGCTTAAAGCACATAAAGACAAATCAGCTCAATGCTTTAAAATGTTTTATAAGGGTG-17671 | KLKAHKDKSAQCFKMFYKG | 60 | 111 | 100 | ORF1ab | 266 | 21,552 | 21,287 | Helicase |
| 19,851-GGACATTGCTGCTAATACTGTGATCTGGGACTACAAAAGAGATGCTCCAGCACATATATCTACTATTGGTGTTTGTTCTATGACT-19935 | DIAANTVIWDYKRDAPAHISTIGVCSMT | 85 | 158 | 100 | ORF1ab | 266 | 21,552 | 21,287 | endoRNAse |
| 20,757-TGCAACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTAAACAC-20825 | ATLPKGIMMNVAKYTQLCQYLN | 69 | 128 | 100 | ORF1ab | 266 | 21,552 | 21,287 | 2′- O- RMT |
| 23,732-ACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATGTACATTTGTGGTGATT-23798 | TEILPVSMTKTSVDCTMYICGD | 67 | 124 | 100 | Spike | 21,563 | 25,381 | 3819 | Spike glycoprotein |
| 24,406-TCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAA-24468 | QDVVNQNAQALNTLVKQLSS | 63 | 117 | 100 | Spike | 21,563 | 25,381 | 3819 | Spike glycoprotein |
| 25,990-TGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCAACTCAATTGAGTACAGA-26057 | CVVLHSYFTSDYYQLYSTQLST | 68 | 126 | 100 | ORF3a | 25,393 | 26,217 | 825 | ORF3a protein |
| 26,560-TTAAAAAGCTCCTTGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTA-26638 | KKLLEQWNLVIGFLFLTWICLLQFA | 79 | 147 | 100 | Membrane | 26,523 | 27,188 | 666 | Membrane glycoprotein |
| 27,129-AACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGT-27189 | NYKLNTDHSSSSDNIALLVQ | 61 | 113 | 100 | Membrane | 26,523 | 27,188 | 666 | Membrane glycoprotein |
| 28,518-ACCAAATTGGCTACTACCGAAGAGCTACCAGACGAATTCGTGGTGGTGACGGTAAAATGAAA-28579 | QIGYYRRATRRIRGGDGKMK | 62 | 115 | 100 | Nucleocapsid | 28,274 | 29,530 | 1257 | Nucleocapsid protein |