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. 2020 Dec 21;6(3):327–338. doi: 10.1038/s41564-020-00836-1

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — Isolates were collected from either the Unité des Bactéries Pathogènes Entériques of the Institut Pasteur Centres (n = 72, light blue) or the MLW Clinical Research Center (n = 608, dark blue). Bar graphs show the number of isolates of different sequence types collected by centre per year. Donut charts indicate the proportion of sequence types collected per country and show the total number of isolates from each location in the centre. Note that only isolates from African countries (M’gascar, Madagascar; Congo, Republic of the Congo) are shown in donut plots. Letters in superscript relate to the location on the map. The colour code is shown at the bottom of the figure.