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. 2020 Dec 21;6(3):327–338. doi: 10.1038/s41564-020-00836-1

Fig. 2. The four major ST313 clusters have different prophage and plasmid repertoires.

Fig. 2

Maximum-likelihood phylogeny demonstrating the population structure of ST313 L1, L2 and L3. Approximate location of UK lineages is indicated schematically (Extended Data Fig. 2) due to the diversity of isolates. Prophage and plasmid repertoire of the reference strain for each lineage are shown (dark grey indicates presence; light grey represents absence). Reference isolates used were A130 (ST313 L1), D23580 (ST313 L2), BKQZM9 (ST313 L3) and U2 (UK strains). Red blocks represent the extent of conservation between lineage reference genomes, with white gaps indicating missing regions. Coloured squares on the pSLT plasmid represents different AMR cassettes. *P22-like prophage is absent in UK reference (U2), but present in some UK strains.