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. 2020 Dec 21;6(3):327–338. doi: 10.1038/s41564-020-00836-1

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 3 — Comparison of the complete genome sequences of ST313 lineage representatives generated using the Artemis Comparison Tool⁸⁶. Reference isolates used; D23580 (ST313 L2), BKQZM9 (ST313 L3) and U2 (UK strains). The number of genes shared between D23580 and BKQZM9 was 4,529. An additional 167 genes were BKQZM9-specific, whereas 309 genes were exclusive to D23580, largely explained by differences in the prophage and plasmid repertoire of the two strains. Red represents sequence similarity and white represents regions absent. Prophage positions are represented as coloured boxes.