Table 1.
Mutations indicative of the main SARS-CoV-2 VOC detectable by the newly designed PCR assays.
| Variant | Nucleotide position in the S gene |
|||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207 | 210 | 240 | 414 | 432 | 456 | 570 | 645 | 666 | 726 | 729 | 732 | 735 | 738 | 1251 | 1356 | 1359 | 1452 | 1503 | 1710 | |
| 20I/501Y.V1 (GR, B.1.1.7) | H69 del | V70 del | Y144 del | N501Y | A570D | |||||||||||||||
| 20H/501Y.V2 (GH, B.1.351) | D80A | D215G | L242H | A243 del | L244 del | H245 del | R246I | K417N | E484K | N501Y | ||||||||||
| 20 J/501Y.V3 (GR, P1) | D138Y | R190S | K417T | E484K | N501Y | |||||||||||||||
| 20E.EU1 (GV, B.1.177) | A222V | |||||||||||||||||||
| CAL 20C (GH, B.1.429) | W152C | L452R | ||||||||||||||||||
| Mink cluster V (GR, B.1.1.298) | H69 del | V70 del | Y453F | |||||||||||||||||
| PCR ID | PCR 973 (a) | PCR 975 (c) | ||||||||||||||||||
| PCR 980 (b) | ||||||||||||||||||||
aAmino acid position 58 to 150 of the spike protein (primers excluded).
bAmino acid position 58 to 573 of the spike protein (primers excluded).
cAmino acid position 479 to 573 of the spike protein (primers excluded).