Table 1.

Fusarium-responsive gene cluster categories and contents.

Gene cluster category	Chromosome	Proteins within the cluster	Cluster ID
Nonhomologous, non-metabolic	1A	Embryogenesis-associated protein EMB8, subtilisin-like protease, kinase family protein, transmembrane protein, putative DUF1218 proteins	2
	1B, 1D	Receptor-like kinases, glucan endo-1,3-beta-glucosidase, cysteine-rich receptor kinase	3, 6
	2B	Receptor-like kinases, glucan endo-1,3-beta-glucosidase, receptor kinase, cysteine-rich receptor kinase	12
	2D	Nucleotide-binding leucine-rich repeats, receptor kinase, plastid transcriptionally active 5	16
	2D	B3 domain-containing protein, RING/U-box superfamily proteins, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	17
	2D	Blue copper proteins, FAD-binding Berberine family protein-putative, Ethylene-responsive transcription factor-putative	19
	3D	Lectin receptor kinases, FMN-dependent NADPH-azoreductases, pyruvate decarboxylase, transcription factor, sugar transporter-putative	20
	3D	Glutathione S-transferases, DNAse I-like superfamily protein, SAUR-like auxin-responsive family proteins, nucleotide-binding leucine-rich repeat	21
	4A, 7D	Lectin receptor kinases, cytochrome P450, ABC transporter (Leaf rust resistance gene 34 (LR34)), sugar transporter-putative	23, 40
	4A	Carbonic anhydrases, Coatomer beta subunit, putative, Fatty acyl-CoA reductase, Peroxidase	24
	4D	Fusarium resistance orphan protein (TaFROG), RZ53, lectin receptor kinase, alcohol dehydrogenases, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein, carboxypeptidase	26
	5A, 5B	MYB transcription factor, histone mono-ubiquitination 2, receptor kinase, alcohol dehydrogenases, putative, TSL-kinase interacting protein 1	28, 31
	5D	Kinases putative, cysteine-rich receptor-kinase-like protein, wall-associated receptor kinase-like proteins	35
	6D	Receptor-like kinases, TMV response-related proteins	39
	7D	Protein EXORDIUM-like 1, glycosyltransferase, RNA-binding protein	41
	7D	J-type co-chaperone jac1, mitochondrial, processing peptidase, TMV response-related proteins	42
	7D	Magnesium transporter NIPA, eukaryotic aspartyl protease proteins, 1-amino-cyclopropane-1-carboxylate oxidase 1, DUF668 family protein, chaperone protein dnaJs	43
Nonhomologous, metabolic	2A, 2B, 2D, Un	Cytochrome P450s, kaurene synthases, copalyl diphosphate synthases, UDP-dependent glycosyltransferases, vacuolar sorting receptor family protein, wall-associated receptor kinase-like protein, receptor-like protein kinase	8, 13, 15, 44
	2B	Cytochrome P450s, wall-associated receptor kinase	11
	5A, 5D	Cytochrome P450s, hydroxysteroid dehydrogenases, terpene cyclase/mutases family member, receptor-like protein kinase, always EARLY-like protein, obtusifoliol 14-alpha demethylase	27, 34
	5D	O-methyltransferases, cytochrome P450, chalcone synthases, chalcone-flavonone isomerase family, leucine rich repeat family protein	36
Paralogous, metabolic	1D	ATP-dependent zinc metalloproteases FtSHs	7
	2A	Ribulose bisphosphate carboxylase small chains, alcohol dehydrogenase, putative	9
	2A	Phenylalanine ammonia-lyases, glucuronoxylan 4-O-methyltransferase	10
	5B	Agmatine coumaroyltransferases, ornithine decarboxylase	32
Paralogous, non-metabolic	1A, 1D	Glutathione S-transferases, RNA binding protein, putative, phospholipase D, alpha/beta-hydrolase superfamily protein	1, 4
	1D	Mitogen-activated protein kinase kinase kinases	5
	2B, 2D	Heavy metal transport/detoxification superfamily proteins, basic helix-loop-helix (bHLH) DNA-binding superfamily protein, nucleotide-binding leucine-rich repeat	14, 18
	3D	RZ53s	22
	4D	Germin-like protein 1 s	25
	5A	Protein of unknown function-DUF538s, 1-pyrroline-5-carboxylate dehydrogenase	29
	5A, 5B	Zinc finger proteins	30, 33
	6A, 6B	MYB transcription factors, hexosyltransferase	37, 38

Encoded proteins by Fusarium-responsive gene within each cluster are listed. Paralogous proteins that represented ≥ 60% of the total protein content of the cluster are highlighted in bold.