TABLE 1:
Biological | Protein pore | Oligomer no. | Constriction diameter (nm) |
Ideal biomarker/polymer class |
---|---|---|---|---|
αHL | 7 | 1.4 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
MspA | 8 | 1.2 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
Phi29 | 12 | 3.6 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
Aerolysin | 7 | 1.0–1.7 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
ClyA - I, II, III | 12, 13, 14 | 2.2, 2.7, 4.2 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
FhuA | 1 | 3.1 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
SP1 | 12 | 3.0 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
FraC - I, II, III | 8, 7, 6 | 1.6, 1.1, 0.8 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
OmpG | 1 | 2.0–2.9 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
Lysenin | 9 | 3.0 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
CsgG | 9 | 1.2 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
NfpAB | 8 | Undisclosed | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
Anthrax Toxin Pore | 7 | 1.5 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes | |
gA | 2 | 4.0 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
VDAC | 1–4 | 3.0–4.0 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
Perforin | 4–21 | 3.2–5.3 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
Streptolysin O | 50–80 | 25.0–35.0 | dsDNA, dsRNA, protein, peptide, antibody capture, synthetic polyelectrolyte | |
VCC | 7 | 0.8 | ssDNA, ssRNA, peptide, small metabolites, synthetic polyelectrolytes |